Pairwise Alignments

Query, 345 a.a., spermidine/putrescine ABC transporter substrate-binding protein from Vibrio cholerae E7946 ATCC 55056

Subject, 362 a.a., Putrescine-binding periplasmic protein from Pseudomonas putida KT2440

 Score =  178 bits (451), Expect = 2e-49
 Identities = 105/327 (32%), Positives = 178/327 (54%), Gaps = 18/327 (5%)

Query: 9   ALCAAALFTTNAM-AKDQELYFYNWSEYIPSEVLEDFTKETGIKVIYSTYESNESMYAKL 67
           +LC  +L     + A+++ +  Y+W++Y+  + L+ F +ETG KV Y T+++ E +  KL
Sbjct: 7   SLCLLSLVLALPLQAEEKVVNLYSWADYVAPQTLQRFEQETGYKVRYDTFDTPEVLETKL 66

Query: 68  KTQGAGYDLVVPSTYFVSKMRKEGMLQEIDHSKLSHFKDLDPNYLNK--PFDPGNKFSIP 125
            T G+GYD+VVPS+  +++  K   LQ +D   +  + +LD + L K    DPGN+ ++P
Sbjct: 67  LTGGSGYDVVVPSSTVLARALKAHALQPLDAQAMPGYGNLDKDLLGKLAEVDPGNRHAVP 126

Query: 126 YIWGATGIGINTDMLDKK----SLKNWGDLWDAKWAGQL-----MLMDDAREVFHIALSK 176
           Y WG  G+G+N + + ++     L +   L+  ++A +L      L D  +EV  +AL+ 
Sbjct: 127 YTWGTLGLGVNVEAVRQRLGDVPLDSLDLLFKPEYATRLKGCGIALPDSPQEVIGVALNY 186

Query: 177 LGYSPNTTNPKEIKAAYRELKKLMPNVLVFNSDFPANPYLAGEVSLGMLWNGSAYM---- 232
           LG  P + N  ++ AA   L +L P++    +    N    G V L + +NG A M    
Sbjct: 187 LGKDPYSQNKDDLAAAQNLLSQLQPSISYVANGRQINDLANGSVCLALTYNGDAAMAADQ 246

Query: 233 ARQEGAPIQIIW--PEKGTIFWMDSISIPAGAKNIEAAHKMIDFLLRPENAAKIALEIGY 290
           AR+ G P ++I+  P +GT+ W D++ IP  A + EAA   I F+L+PE+ A +   + +
Sbjct: 247 ARRAGKPFEVIYRIPREGTLVWQDNLVIPKDAPHPEAARAFIAFMLKPESVAALTNTLFF 306

Query: 291 PTPVKTAHDLLPKEFANDPSIYPPQSV 317
               + A  L+ +   NDP IYP   V
Sbjct: 307 ANANQAATPLVDEAVRNDPDIYPSAEV 333