Pairwise Alignments

Query, 345 a.a., spermidine/putrescine ABC transporter substrate-binding protein from Vibrio cholerae E7946 ATCC 55056

Subject, 363 a.a., Putrescine-binding periplasmic protein SpuD from Pseudomonas lactucae CFBP13502

 Score =  189 bits (479), Expect = 1e-52
 Identities = 110/335 (32%), Positives = 187/335 (55%), Gaps = 20/335 (5%)

Query: 3   NKLFASALCAAALFTTNAMAKDQELYFYNWSEYIPSEVLEDFTKET-GIKVIYSTYESNE 61
           NKL   ALCA  L +  A A ++ L  YNW +YI  + LEDF  +   +K++Y  +++NE
Sbjct: 2   NKLTTLALCAV-LLSGVAHADEKTLRVYNWFDYITPKALEDFKAQNPSLKLVYDIFDTNE 60

Query: 62  SMYAKLKTQGAGYDLVVPSTYFVSKMRKEGMLQEIDHSKLSHFKDLDPNYLN--KPFDPG 119
           ++ AKL T  +GYD+VVPS  F++K  + G+ Q +D ++L ++  LDP  +   +  DPG
Sbjct: 61  ALEAKLLTGNSGYDVVVPSNVFLAKQIEAGVFQPLDRNQLPNWNHLDPKLMKLIEANDPG 120

Query: 120 NKFSIPYIWGATGIGINTDML-----DKKSLKNWGDLWDAKWAGQLM-----LMDDAREV 169
           N+F++PY++G   IG N   +     D   + +W  +++ +   +L      L+D   E+
Sbjct: 121 NQFAVPYMYGTILIGFNPAKVKAALGDNAPVDSWDLIFNEENISKLKQCGVALLDSPSEI 180

Query: 170 FHIALSKLGYSPNTTNPKEIKAAYRELKKLMPNVLVFNSDFPANPYLAGEVSLGMLWNGS 229
             +AL  LG  PN+ NPK+ + A   L K+ P +  F+S         G++ + + ++GS
Sbjct: 181 LPLALQHLGLDPNSNNPKDYEKAEALLLKIRPYITYFHSSKYMADIANGDICVAVGYSGS 240

Query: 230 ----AYMARQ--EGAPIQIIWPEKGTIFWMDSISIPAGAKNIEAAHKMIDFLLRPENAAK 283
               A  AR+   G  + +  P++G   W D ++IP GAKN + A+  I++LL+P+  A 
Sbjct: 241 FSQAANRAREAHNGVTVDMRLPKEGAPIWFDMLAIPKGAKNPQDAYTFINYLLQPQVIAP 300

Query: 284 IALEIGYPTPVKTAHDLLPKEFANDPSIYPPQSVI 318
           I+  +GYP P K A   +     N+P++YP ++ +
Sbjct: 301 ISDFVGYPNPNKDATQQVDPAIRNNPNLYPTEAAM 335