Pairwise Alignments

Query, 345 a.a., spermidine/putrescine ABC transporter substrate-binding protein from Vibrio cholerae E7946 ATCC 55056

Subject, 389 a.a., Putrescine ABC transporter putrescine-binding protein PotF (TC 3.A.1.11.2) from Hydrogenophaga sp. GW460-11-11-14-LB1

 Score =  162 bits (411), Expect = 1e-44
 Identities = 96/293 (32%), Positives = 159/293 (54%), Gaps = 20/293 (6%)

Query: 24  DQELYFYNWSEYIPSEVLEDFTKETGIKVIYSTYESNESMYAKLKTQGAGYDLVVPSTYF 83
           ++ L  YNW +YI   ++ DF KE G+KV Y T+E+NE+++AKL    +GYD+V+P+  F
Sbjct: 49  EKVLNVYNWPDYITETLIADFEKEYGVKVNYDTFENNEALHAKLVAGNSGYDIVIPTAGF 108

Query: 84  VSKMRKEGMLQEIDHSKLSHFKDLDPNYLNK--PFDPGNKFSIPYIWGATGIGINTDMLD 141
             K    G+ Q ID SKL ++ +LD +++ K    DP NK  +P+ WG T +GIN   ++
Sbjct: 109 AKKQIDGGLYQPIDKSKLKNYGNLDTDFMAKIAGVDPDNKHLVPWAWGFTTVGINKQKVE 168

Query: 142 KK--SLKNWGDLWDAKWAGQ---------LMLMDDAREVFHIALSKLGYSPNTTNPKEIK 190
           K    +    + WD  +  +         +  +D   E+  +AL  +G    + NP++ K
Sbjct: 169 KALGGMPMPENAWDLVFKPEYSSKLKSCGIAYLDSPSEILPVALHYVGKPAYSENPEDFK 228

Query: 191 AAYRELKKLMPNVLVFNSDFPANPYLAGEVSLGMLWNGSAYMA----RQEGAPIQII--W 244
            A   LKK+  +V +F+S    +    G+    + W+G   +A    ++ G   +I+   
Sbjct: 229 LAGEMLKKVRKDVRLFSSTM-IDDIAGGKACAFIGWSGDINIAAGRVKETGGKDEIVPLL 287

Query: 245 PEKGTIFWMDSISIPAGAKNIEAAHKMIDFLLRPENAAKIALEIGYPTPVKTA 297
           P  G + ++D+++IP  AK++  AH  +DF LR  NAA +A E+ YPT  K A
Sbjct: 288 PTGGGLVFIDTMAIPKDAKHVNNAHVFMDFYLRAANAAAMANELNYPTGNKAA 340