Pairwise Alignments

Query, 345 a.a., spermidine/putrescine ABC transporter substrate-binding protein from Vibrio cholerae E7946 ATCC 55056

Subject, 348 a.a., spermidine/putrescine ABC transporter periplasmic substrate-binding protein (NCBI) from Escherichia coli BW25113

 Score =  451 bits (1160), Expect = e-131
 Identities = 218/333 (65%), Positives = 264/333 (79%), Gaps = 2/333 (0%)

Query: 12  AAALFTTNAMAKDQE-LYFYNWSEYIPSEVLEDFTKETGIKVIYSTYESNESMYAKLKTQ 70
           A AL  + A A D   LYFYNW+EY+P  +LE FTKETGIKVIYSTYESNE+MYAKLKT 
Sbjct: 13  ALALGMSAAHADDNNTLYFYNWTEYVPPGLLEQFTKETGIKVIYSTYESNETMYAKLKTY 72

Query: 71  GAG-YDLVVPSTYFVSKMRKEGMLQEIDHSKLSHFKDLDPNYLNKPFDPGNKFSIPYIWG 129
             G YDLVVPSTY+V KMRKEGM+Q+ID SKL++F +LDP+ LNKPFDP N +SIPYIWG
Sbjct: 73  KDGAYDLVVPSTYYVDKMRKEGMIQKIDKSKLTNFSNLDPDMLNKPFDPNNDYSIPYIWG 132

Query: 130 ATGIGINTDMLDKKSLKNWGDLWDAKWAGQLMLMDDAREVFHIALSKLGYSPNTTNPKEI 189
           AT IG+N D +D KS+ +W DLW  ++ G L+L DDAREVF +AL KLGYS NTT+PKEI
Sbjct: 133 ATAIGVNGDAVDPKSVTSWADLWKPEYKGSLLLTDDAREVFQMALRKLGYSGNTTDPKEI 192

Query: 190 KAAYRELKKLMPNVLVFNSDFPANPYLAGEVSLGMLWNGSAYMARQEGAPIQIIWPEKGT 249
           +AAY ELKKLMPNV  FNSD PANPY+ GEV+LGM+WNGSA++ARQ G PI ++WP++G 
Sbjct: 193 EAAYNELKKLMPNVAAFNSDNPANPYMEGEVNLGMIWNGSAFVARQAGTPIDVVWPKEGG 252

Query: 250 IFWMDSISIPAGAKNIEAAHKMIDFLLRPENAAKIALEIGYPTPVKTAHDLLPKEFANDP 309
           IFWMDS++IPA AKN E A K+I+FLLRP+ A ++A  IGYPTP   A  LL  E AND 
Sbjct: 253 IFWMDSLAIPANAKNKEGALKLINFLLRPDVAKQVAETIGYPTPNLAARKLLSPEVANDK 312

Query: 310 SIYPPQSVIDNGEWQDEVGEASVLYDEYFQKLK 342
           ++YP    I NGEWQ++VG AS +Y+EY+QKLK
Sbjct: 313 TLYPDAETIKNGEWQNDVGAASSIYEEYYQKLK 345