Pairwise Alignments

Query, 345 a.a., spermidine/putrescine ABC transporter substrate-binding protein from Vibrio cholerae E7946 ATCC 55056

Subject, 370 a.a., Spermidine/putrescine-binding periplasmic protein from Enterobacter asburiae PDN3

 Score =  193 bits (491), Expect = 5e-54
 Identities = 114/338 (33%), Positives = 179/338 (52%), Gaps = 24/338 (7%)

Query: 3   NKLFASALCAAALFTTNA---MAKDQELYFYNWSEYIPSEVLEDFTKETGIKVIYSTYES 59
           NK + S L A AL   +A    A+ + L+ YNWS+YI  + + +F KETGIKV+Y  ++S
Sbjct: 5   NKKWLSGLVAGALMAVSAGTLAAEQKTLHVYNWSDYIAPDTVANFEKETGIKVVYDVFDS 64

Query: 60  NESMYAKLKTQGAGYDLVVPSTYFVSKMRKEGMLQEIDHSKLSHFKDLDPNYLN--KPFD 117
           NE +  KL     G+DLVVPS  F+ +    G+ Q +D SKL ++K+LDP  L      D
Sbjct: 65  NEVLEGKLMAGSTGFDLVVPSASFLERQLTAGVFQPLDKSKLPNWKNLDPEVLKLVAKHD 124

Query: 118 PGNKFSIPYIWGATGIGINTDML-----DKKSLKNWG------DLWDAKWAGQLMLMDDA 166
           P NK+++PY+W  TGIG N D +         L +W       +L   K  G +  +D  
Sbjct: 125 PDNKYAMPYLWATTGIGYNVDKVKAVLGPDVKLDSWDVVLKPENLEKLKSCG-VSFLDAP 183

Query: 167 REVFHIALSKLGYSPNTTNPKEIKAAYRE-LKKLMPNVLVFNSDFPANPYLAGEVSLGML 225
            E+F   L+ LG  PN++   +      + L KL PN+  F+S    N    G++ + + 
Sbjct: 184 EEIFATVLNYLGKDPNSSKADDYTGPATDLLLKLRPNIRYFHSSQYINDLANGDICVAIG 243

Query: 226 WNGSAYMA------RQEGAPIQIIWPEKGTIFWMDSISIPAGAKNIEAAHKMIDFLLRPE 279
           W G  + A       + G  +    P++G + + D  ++PA AKN + A++ +++L+RPE
Sbjct: 244 WAGDVWQAANRAKEAKNGVNVSYFIPKEGALAFFDVFAMPADAKNKDEAYQFLNYLMRPE 303

Query: 280 NAAKIALEIGYPTPVKTAHDLLPKEFANDPSIYPPQSV 317
             A I+  + Y    K +  L+ +E  N+P+IYPP  V
Sbjct: 304 VIAHISDHVYYANGNKASVPLVSEEIRNNPAIYPPADV 341