Pairwise Alignments

Query, 345 a.a., spermidine/putrescine ABC transporter substrate-binding protein from Vibrio cholerae E7946 ATCC 55056

Subject, 370 a.a., spermidine/putrescine ABC transporter substrate-binding protein PotF from Escherichia coli ECRC62

 Score =  193 bits (490), Expect = 7e-54
 Identities = 115/338 (34%), Positives = 176/338 (52%), Gaps = 24/338 (7%)

Query: 3   NKLFASALCAAALFTTNA---MAKDQELYFYNWSEYIPSEVLEDFTKETGIKVIYSTYES 59
           NK + S L A AL   +     A+ + L+ YNWS+YI  + + +F KETGIKV+Y  ++S
Sbjct: 5   NKKWLSGLVAGALMAVSVGTLAAEQKTLHIYNWSDYIAPDTVANFEKETGIKVVYDVFDS 64

Query: 60  NESMYAKLKTQGAGYDLVVPSTYFVSKMRKEGMLQEIDHSKLSHFKDLDPNYLN--KPFD 117
           NE +  KL     G+DLVVPS  F+ +    G+ Q +D SKL  +K+LDP  L      D
Sbjct: 65  NEVLEGKLMAGSTGFDLVVPSASFLERQLTAGVFQPLDKSKLPEWKNLDPELLKLVAKHD 124

Query: 118 PGNKFSIPYIWGATGIGINTDML-----DKKSLKNWG------DLWDAKWAGQLMLMDDA 166
           P NKF++PY+W  TGIG N D +     +   + +W       +L   K  G +  +D  
Sbjct: 125 PDNKFAMPYMWATTGIGYNVDKVKAVLGENAPVDSWNLILKPENLEKLKSCG-VSFLDAP 183

Query: 167 REVFHIALSKLGYSPNTTNPKEIKAAYRE-LKKLMPNVLVFNSDFPANPYLAGEVSLGML 225
            EVF   L+ LG  PN+T   +      + L KL PN+  F+S    N    G++ + + 
Sbjct: 184 EEVFATVLNYLGKDPNSTKADDYTGPATDLLLKLRPNIRYFHSSQYINDLANGDICVAIG 243

Query: 226 WNGSAYMA------RQEGAPIQIIWPEKGTIFWMDSISIPAGAKNIEAAHKMIDFLLRPE 279
           W G  + A       + G  +    P++G + + D  ++PA AKN + A++ +++LLRP+
Sbjct: 244 WAGDVWQASNRAKEAKNGVNVSFSIPKEGAMAFFDVFAMPADAKNKDEAYQFLNYLLRPD 303

Query: 280 NAAKIALEIGYPTPVKTAHDLLPKEFANDPSIYPPQSV 317
             A I+  + Y    K A  L+  E  ++P IYPP  V
Sbjct: 304 VVAHISDHVFYANANKAATPLVSAEVRDNPGIYPPADV 341