Pairwise Alignments

Query, 458 a.a., sodium:alanine symporter family protein from Vibrio cholerae E7946 ATCC 55056

Subject, 476 a.a., predicted transporter (NCBI) from Escherichia coli BW25113

 Score =  273 bits (698), Expect = 9e-78
 Identities = 159/454 (35%), Positives = 245/454 (53%), Gaps = 19/454 (4%)

Query: 4   LQSFLQTVDSLVWGPPLLILLVGTGVYFTFRLGLLQFRRLPTALAMVFGREKSSD---KQ 60
           +  F   ++S++WG  ++ LL G G +FTFR G +QFR +       FG+   +    + 
Sbjct: 1   MPDFFSFINSVLWGSVMIYLLFGAGCWFTFRTGFVQFRYIRQ-----FGKSLKNSIHPQP 55

Query: 61  GDVSSFAALCTALSATIGTGNIVGVATAIKLGGPGALFWMWLAALFGMATKYAECLLAVK 120
           G ++SF +LCT+L+A +G+GN+ GVA AI  GGPGA+FWMW+AA  GMAT +AEC LA  
Sbjct: 56  GGLTSFQSLCTSLAARVGSGNLAGVALAITAGGPGAVFWMWVAAFIGMATSFAECSLAQL 115

Query: 121 YRQIDDKGQMVGGPMYYLRDGVSSKTLAVLFAVF---AVGVACFGIGTFPQVNAILDATQ 177
           Y++ D  GQ  GGP +Y+  G+  + + VLFAVF   A G+   G+    Q NA+  A  
Sbjct: 116 YKERDVNGQFRGGPAWYMARGLGMRWMGVLFAVFLLIAYGIIFSGV----QANAVARALS 171

Query: 178 ISFGVPREASAVVLTVLVAIVTIGGIQSIAKVAGKVVPAMALFYIIACLSVIVTNADKLA 237
            SF  P   + ++L V   +    G+  +A++    VP MA+ +++  L + V N  +L 
Sbjct: 172 FSFDFPPLVTGIILAVFTLLAITRGLHGVARLMQGFVPLMAIIWVLTSLVICVMNIGQLP 231

Query: 238 DAVELVLVSAFTSTAATGGFLGASIMLAIQSGIARGVFSNESGLGSAPMAAAAAKT--DS 295
             +  +  SAF    A GG  G ++  AI +G  R +FSNE+G+GS P AAAAA +    
Sbjct: 232 HVIWSIFESAFGWQEAAGGAAGYTLSQAITNGFQRSMFSNEAGMGSTPNAAAAAASWPPH 291

Query: 296 CVEQGLISMTGTFFDTIIICTMTGLALILTGAWQSDLSGAAMTTYAFATGLNAQTIGPML 355
              QG++ M G F DT++ICT + + ++L G   + +    +     A  +   + G   
Sbjct: 292 PAAQGIVQMIGIFIDTLVICTASAMLILLAGNGTTYMPLEGIQLIQKAMRVLMGSWGAEF 351

Query: 356 VSIGLMFFAFTTILGWNYYGERCMVF--LFGTKAVLPYKIVFIGLIASGAFLHLDLIWII 413
           V++ ++ FAF++I+    Y E  + F  L   KA+   +I     +  G  L L L+W +
Sbjct: 352 VTLVVILFAFSSIVANYIYAENNLFFLRLNNPKAIWCLRICTFATVIGGTLLSLPLMWQL 411

Query: 414 ADIVNGLMAIPNLIGLVALRHVVVEETKQYFAAR 447
           ADI+   MAI NL  ++ L  VV      Y   R
Sbjct: 412 ADIIMACMAITNLTAILLLSPVVHTIASDYLRQR 445