Pairwise Alignments

Query, 1163 a.a., type VI secretion system tip protein VgrG from Vibrio cholerae E7946 ATCC 55056

Subject, 646 a.a., type VI secretion protein ImpA from Pseudomonas simiae WCS417

 Score =  334 bits (856), Expect = 2e-95
 Identities = 200/609 (32%), Positives = 319/609 (52%), Gaps = 20/609 (3%)

Query: 42  FRYEVQLASRVSNLTAEQMVDKRAELKLYRNSQLVQRVHGIVRAFSQGDIGHHHTFYQLT 101
           F YE+QL S  +N+   Q++ K   + L       +  HGIV   SQ         YQ+T
Sbjct: 36  FNYELQLTSLDANIDLNQLLGKPMSVGLQLADGGERHFHGIVARCSQNIDQGQFASYQVT 95

Query: 102 LVPALERLSLRHNSRIFQKQTVPEILSILLQEMGINDYAFALKRDGVQREFCVQYRESDI 161
           L P L  LS   + RIFQ  ++P+I+  + +++G +D+  AL R   + E+CVQYRE+  
Sbjct: 96  LRPWLWLLSRTSDCRIFQNLSIPQIIKQVFRDLGFSDFEDALSRPYREWEYCVQYRETSF 155

Query: 162 DFLHRLAAEEGLVYSFVHEAGKHTLYFSDASDSLSKLP--EPIPYNALVGGAIDTPYIHG 219
           DF+ RL  +EG+ Y F HE  +H L  +DA  + + +P    IPY        +  ++H 
Sbjct: 156 DFVSRLMEQEGIYYFFRHEQDRHVLVLADAYGAHTTVPGYASIPYYPKDEQQRERDHMHN 215

Query: 220 LTYRTQAEVSEVQLKDYSFKKPAYSFLQTVQGTELDYQQTRYQHFDAPGRYKDDVNGAAF 279
                + +   ++L DY F++P+ S +         +    Y  +D PG Y    +G  +
Sbjct: 216 WHLAHEVQPGSMELNDYDFQRPSAS-IDVRSAMPRPHTAGDYPLYDYPGTYVQSEDGEHY 274

Query: 280 SQIRLDYLRRHAHTATGQSNEPLLRAGYKFDLQEHLDPAMNRDWVVVSINHQGEQPQALQ 339
           ++ R++ L+          N   L +G+ F L        NR++++V   +   Q ++L+
Sbjct: 275 ARTRIEALQTLHEQIEFNGNARGLGSGHLFSLTGFSRQDQNREYLIVGCRYYIVQ-ESLE 333

Query: 340 EDGGSGATTYSNQFSLIPGHLHWRAEPQP-KPQVDGPMIATVVGPEGEEIFCDEHGRVKI 398
             GGSG+  + +  + I     +R      +P V GP  A VVGP+GEEI+ D++GRVK+
Sbjct: 334 SGGGSGSAQFESSLTCIDAQQSFRPLANTHRPIVKGPQTALVVGPKGEEIWTDQYGRVKV 393

Query: 399 HFPWDRYSNGNEQSSCWVRVSQGWAGSQYGFIAIPRIGHEVIVEFLNGDPDQPIITGRTY 458
           HF WDR+   NE SSCW+RVSQ WAG  +G + IPRIG EVIV FL GDPD+PIITGR Y
Sbjct: 394 HFYWDRHDQSNENSSCWIRVSQSWAGKNWGSMQIPRIGQEVIVSFLEGDPDRPIITGRVY 453

Query: 459 HATNTPPYTLPEHKTKTVLRTETHQG---EGFNELSFEDQAGKEQIYLHAQKDFDGLIEN 515
           +A  T PY LPE+ T++ +++ + +G     FNE+  ED+ G EQ+Y+HA+++ D ++E 
Sbjct: 454 NAEQTVPYDLPENATQSGMKSRSSKGGSPANFNEIRMEDKKGLEQLYIHAERNQDIVVEV 513

Query: 516 DHTTVIRHDHHLTVENDQFTQIKHNQHLTVEWESREAVTGEQVLSIEGSLHVKTGKVWVN 575
           D +  + HD +          I HN+ +T+       V  E +LS+         + +V 
Sbjct: 514 DESHSVGHDRN--------KSIGHNETVTIGNNRLRIVKQEDILSVGQKKTDSISQSYVI 565

Query: 576 EAGTEIHVKAGQKVV-IEAGSEITVKAGGSFVKVDPAGVHLSGALVNLNSGGSAGS---G 631
           E G  + +  G+ ++ + A  +I +                +G +++LN+GG  G+   G
Sbjct: 566 EVGENLRLVCGESILELNASGQINLTGVQISFYASGDAEFNTGGVLHLNNGGGPGATPDG 625

Query: 632 SGFGGAMPA 640
            G  GA+ A
Sbjct: 626 QGQKGAIDA 634