Pairwise Alignments

Query, 1163 a.a., type VI secretion system tip protein VgrG from Vibrio cholerae E7946 ATCC 55056

Subject, 658 a.a., type IV secretion protein Rhs from Pseudomonas simiae WCS417

 Score =  353 bits (906), Expect = e-101
 Identities = 223/659 (33%), Positives = 329/659 (49%), Gaps = 51/659 (7%)

Query: 5   AYSIEVEGLEDETLVVRGFHGQESLSNSVFLGQACYGFRYEVQLASRVSNLTAEQMVDKR 64
           A+++ ++G   E  V   F G ES+S           +R++++L S   +L  E ++ ++
Sbjct: 9   AFTLTLDGEPSEFKVFE-FSGIESISQP---------YRFDIELVSEQPDLDLESLLHRQ 58

Query: 65  AELKLYRNSQLVQRVHGIVRAFSQGDIGHHHTFYQLTLVPALERLSLRHNSRIFQKQTVP 124
             L      +    VHG+V   +QGD G   T YQ+TLVP L  L    + RIFQ +TVP
Sbjct: 59  VYLGFDDRGR---GVHGLVYRMAQGDSGRRLTRYQMTLVPQLAYLGHSSHQRIFQHKTVP 115

Query: 125 EILSILLQEMGINDYAFALKRDGV--QREFCVQYRESDIDFLHRLAAEEGLVYSFVHEAG 182
           +I++ +L+  GI    F  +  G   +RE+CVQ+ E+D+ F+ RL AE G+ Y F H + 
Sbjct: 116 QIVAQVLEGQGIQRDRFEFRLSGTYPEREYCVQFGETDLAFIQRLCAELGIHYHFQHSSA 175

Query: 183 KHTLYFSDASDSLSKLPEPIPYNALVGGAIDTPYIHGLTYRTQAEVSEVQLKDYSFKKPA 242
            H L F D      +   P PY    G   DTP I     + QA  + V L+DY F+KP+
Sbjct: 176 GHLLVFGDDQTVFVQADPPTPYTPGSGMVADTPVIKRFAVQVQARTTGVNLRDYDFRKPS 235

Query: 243 YSFLQTVQGTELDYQQTRYQHFDAPGRYKDDVNGAAFSQIRLDYLRRHAHTATGQSNEPL 302
            +    V G +L   + +      PG + D  +G   +Q  L+  R     A G  +EP 
Sbjct: 236 LALESEVTGEQLPPLEAQVY----PGHFNDRAHGKYLAQRGLERHRSDYRVARGSGDEPA 291

Query: 303 LRAGYKFDLQEHLDPAMNRDWVVVSINHQGEQPQALQED-----GGSGATTYSNQFSLIP 357
           L +G    L  H     N  W+V  + H+G QPQ L+E      GG     Y N+FS  P
Sbjct: 292 LGSGRFLKLAGHPREDWNDLWLVTHVTHEGLQPQVLEESVTEVAGGDFRQGYRNEFSATP 351

Query: 358 GHLHWRAE--PQPKPQVDGPMIATVVGPEGEEIFCDEHGRVKIHFPWDRYSNGNEQSSCW 415
               +R     QP+P + G   A V GP   EI CDE+GRVK+   WDR    N+ SSCW
Sbjct: 352 WDAIFRPPMPEQPRPTIAGYQNAVVTGPADSEIHCDEYGRVKVQLVWDRDGEHNDHSSCW 411

Query: 416 VRVSQGWAGSQYGFIAIPRIGHEVIVEFLNGDPDQPIITGRTYHATNTPPYTLPEHKTKT 475
           +RV+ GWA  +YG + IPR+G EV+V F+NGD D P++ G   +A    P  LP  KT++
Sbjct: 412 LRVASGWAHDRYGSVLIPRVGMEVLVGFVNGDMDMPLVMGCLPNAATQVPLDLPADKTRS 471

Query: 476 VLRTETHQ-GEGFNELSFEDQAGKEQIYLHAQKDFDGLIENDHTTVIRHDHHLTVENDQF 534
           V R+++   G G+NEL  ED+ G E+IYL AQ+D+        T  + HD  + V+ +  
Sbjct: 472 VFRSQSSPGGGGYNELRIEDRKGAEEIYLRAQRDW--------TQHVLHDLRVNVDGE-- 521

Query: 535 TQIKHNQHLTVEWESREAVTGEQVLSIEGSLHVKTGKVWVNEAGTEIHVKAGQKVVIEAG 594
                  H  ++ E      G ++  ++   H+  G      AG  I + AGQ VVIE G
Sbjct: 522 ------SHHELQGEELRITHGNRLTDLKQDDHLMVGGSRQVRAGQTIQIGAGQSVVIEGG 575

Query: 595 SEITVKAGGSFVKVDPAGVHLSGALVNLNSGGSAGSGSGFGGAMPALPGGLEPAVALAP 653
           + +T++AGG  + +   G+  S   + L S  +A        A P  PG  E  +A+ P
Sbjct: 576 ATVTIQAGGQSITLCAGGI-FSSVPIQLGSAPAA-------TAAPLTPGLKETVLAVIP 626