Pairwise Alignments

Query, 1163 a.a., type VI secretion system tip protein VgrG from Vibrio cholerae E7946 ATCC 55056

Subject, 672 a.a., type IV secretion protein Rhs from Pseudomonas simiae WCS417

 Score =  363 bits (931), Expect = e-104
 Identities = 218/627 (34%), Positives = 331/627 (52%), Gaps = 39/627 (6%)

Query: 15  DETLVVRGFHGQESLSNSVFLGQACYGFRYEVQLASRVSNLTAEQMVDKRAELKLYRNSQ 74
           D  L V  F G E L    F+          +Q+ S   +L  E ++ + A L      +
Sbjct: 18  DIDLQVLAFKGSEVLDQPFFI---------HIQVVSENPSLDLEALLHQPAYLAF---GE 65

Query: 75  LVQRVHGIVRAFSQGDIGHHHTFYQLTLVPALERLSLRHNSRIFQKQTVPEILSILLQEM 134
               +HG V A  + D G   T Y LTL P L  L+ R + RIFQ+++VP+I++ +L++ 
Sbjct: 66  ADDGLHGQVYAIGRDDPGRRTTRYHLTLAPRLAYLAHRRDQRIFQQRSVPQIIAEVLEQH 125

Query: 135 GINDYAFALKRDGV---QREFCVQYRESDIDFLHRLAAEEGLVYSFVHEAGKHTLYFSDA 191
           GI   A+A +   V    R FCVQY ESD+ F+ RL  EEG+ Y F H    H L F D 
Sbjct: 126 GILADAYAFELGPVVYPPRTFCVQYAESDLHFIQRLCEEEGIHYHFRHSVDAHLLVFGDD 185

Query: 192 SDSLSKLPEPIPYNALVGGAIDTPYIHGLTYRTQAEVSEVQLKDYSFKKPAYSFLQTVQG 251
                +LP    Y+A  G   DTP I     R      +   +DY F+ P+   L    G
Sbjct: 186 QTVFPRLPVQC-YSAPGGPHADTPVIQRFDVRLGIRSQKTVRRDYDFEHPSVH-LHDSAG 243

Query: 252 TELDYQQTRYQHFDAPGRYKDDVNGAAFSQIRLDYLRRHAHTATGQSNEPLLRAGYKFDL 311
                    YQ+   P  +     G   ++  L+  +R  + A G+S++P+LR+G+  ++
Sbjct: 244 AASTLPLEDYQY---PAGFTAHTRGKQLARRSLELHQRDRYRALGKSDQPVLRSGHFLEI 300

Query: 312 QEHLDPAMNRDWVVVSINHQGEQPQALQEDGGSGATT----YSNQFSLIPGHLHWRAEPQ 367
           ++H DP+ N  W++ S+ H+G QPQ L+E   + AT     Y N+F+  P    W+A  +
Sbjct: 301 RDHPDPSCNDLWLITSVRHEGYQPQVLEE--ATPATDVFQGYRNRFTATP----WQAVHR 354

Query: 368 P-----KPQVDGPMIATVVGPEGEEIFCDEHGRVKIHFPWDRYSNGNEQSSCWVRVSQGW 422
           P     KP ++G   ATV GP GE++ CD +GRVK+ F WDR    +++SSCW+RV+ GW
Sbjct: 355 PSLRHTKPTINGSQTATVTGPAGEDVHCDVYGRVKVRFHWDRLDEADDKSSCWLRVASGW 414

Query: 423 AGSQYGFIAIPRIGHEVIVEFLNGDPDQPIITGRTYHATNTPPYTLPEHKTKTVLRTETH 482
           AG  +G   IPR+G EV+V FL+GDPD+P+I G   +A + P Y LP HKT++VLR+ + 
Sbjct: 415 AGDGFGATMIPRVGMEVLVTFLDGDPDRPLINGCLPNALHRPTYPLPLHKTRSVLRSSSS 474

Query: 483 -QGEGFNELSFEDQAGKEQIYLHAQKDFDGLIENDHTTVIRHDHHLTVENDQFTQIKHNQ 541
             GEG NEL  ED+ G+E +YL AQ+D +  I +D    +  +    +     T +K  +
Sbjct: 475 LGGEGSNELYLEDRRGEELVYLRAQRDLEQRIGHDSRLEVAGERQEVIHGISTTHLKSEE 534

Query: 542 HLTVEWESREAVTGEQVLSIEGSLHVKTGKVWVNEAGTEIHVKAGQKVVIEAGSEITVKA 601
           H  V  + +  +     L + G       +  V EAG ++H+K+G  +VI+AG+E+++KA
Sbjct: 535 HRQVTGDRKVLLKASDYLDVHGDSRTHVAQTLVIEAGQQLHLKSGASLVIDAGAELSLKA 594

Query: 602 GGSFVKVDPAGVHLSGALVNLNSGGSA 628
           GG  + +   G+  S  +     GGSA
Sbjct: 595 GGEHLVIQAGGIFSSRPIA---LGGSA 618