Pairwise Alignments

Query, 1163 a.a., type VI secretion system tip protein VgrG from Vibrio cholerae E7946 ATCC 55056

Subject, 792 a.a., VgrG protein from Variovorax sp. SCN45

 Score =  234 bits (597), Expect = 2e-65
 Identities = 200/677 (29%), Positives = 305/677 (45%), Gaps = 86/677 (12%)

Query: 44  YEVQLASRVSNLTAEQMV----DKRAELKLYRNSQLVQRVHG-IVRAFSQGDIGHHHTFY 98
           YE+ + S+   L A  ++    D   E +    ++ V+   G  VR    G +G +   Y
Sbjct: 35  YELTVLSKSRTLDARDILGRAFDVSIEFEDADGARHVRHCQGHAVRFMRAGHVGRYFE-Y 93

Query: 99  QLTLVPALERLSLRHNSRIFQKQTVPEILSILLQEMGINDYAFALKRDGV-----QREFC 153
           ++ L      L+ R NSRI Q + V E+L  + ++  I  +    + D V      R +C
Sbjct: 94  RIALRSWFWLLTKRINSRILQDKKVLEVLDAVFEDSPIKRFK-KTRADNVIGTHEPRRYC 152

Query: 154 VQYRESDIDFLHRLAAEEGLVYSFVHEAGKHTLYFSDASD-SLSKLPEPIPYNALVGGAI 212
           VQ++ESD  FL RL  +EG+ Y F       T++ SDASD +  KLP     N +  GA 
Sbjct: 153 VQHQESDYQFLSRLLEDEGIYYWFDAHDAPGTMHLSDASDLAHDKLPAASTLNFMPAGAT 212

Query: 213 ---DTPYIHGLTYRTQAEVSEVQLKDYSFKKPAYSFLQTVQGTELDYQQTRYQHFDAPGR 269
              D      ++ R Q +  +   +D +FK      L+   G     + + ++ F+  G 
Sbjct: 213 EPRDNEISRWISER-QFDTGKYASRDSNFKSIKKK-LEATGGEPDKCELSEFEAFEFAGG 270

Query: 270 YKDDVNGAAFSQIRLDYL--RRHAHTATGQSNEPLLRAGYKFDLQEHLDPAMNRDWVVVS 327
           Y    +     ++R + +  RR  H A   +  P + AG  F  +   D A + D+V+ +
Sbjct: 271 YFSGGDADDKGKLRGEEIGARRQRHFAL--TRWPDVAAGRSFTFKGDPDAARDGDYVIAA 328

Query: 328 I----NHQGEQP---------------QALQED----------------------GGSGA 346
                +H G +                +AL++D                      G +G 
Sbjct: 329 CTFVASHSGYEGVPEVGDPVPLDVLLREALEDDAVCADTLPVLRELVAQTPALRAGRNGD 388

Query: 347 TTYSNQFSLIPGHLHWRAEP-QPKPQVDGPMIATVVGPEGEEIFCDEHGRVKIHFPWDRY 405
           + +    +++P  + +R     P+ ++ GP  A VVGP+GEEI  D+ GRVK+HF WDRY
Sbjct: 389 SAFL--LTVMPIDVPFRPPRLTPRVRMPGPQSAIVVGPDGEEIHADDFGRVKVHFHWDRY 446

Query: 406 SNGNEQSSCWVRVSQGWAGSQYGFIAIPRIGHEVIVEFLNGDPDQPIITGRTYHATNTPP 465
              NE+S+CWVRVSQ WAG  +G   IPRIG EVIV+FLNGDPD+P++ GR Y+     P
Sbjct: 447 DKSNEKSTCWVRVSQPWAGKGWGGYFIPRIGQEVIVDFLNGDPDRPLVIGRVYNDDQPIP 506

Query: 466 YTLPEHKTKTVLRTETHQGEGFNELSFEDQAGKEQIYLHAQKDFDGLIENDHTTVIRHDH 525
           +            T        NE  FED+ G EQ+YLHA+K+ D  +END T  + HD 
Sbjct: 507 FGSHTQSGFRTRSTPKGSAANCNEFRFEDKKGSEQVYLHAEKNQDIEVENDETHWVGHDR 566

Query: 526 HLTVENDQFTQIKHNQHLTVEWESREAVTGEQVLSIEGSLHVKTGKVWVNEAGTEIHVKA 585
             TV++D+   +KH++  TV    +  +   +  S+  +   +T  + VN   T      
Sbjct: 567 KKTVDHDETVHVKHDRTETVGNNEKITIGVNRTESVGNN---ETISIGVNRTET-----V 618

Query: 586 GQKVVIEAGSEITVKAGGSFVKVDPAGVHLSGALVNLNSGGSAGSGSGFG-GAMPALPGG 644
           G    I  GS  T+  G S             A V L    + G       GA   +  G
Sbjct: 619 GSNETITIGSNRTITVGAS-----------ETATVALQRTHTVGVNETITVGAAQEITVG 667

Query: 645 LEPAVALAPPQTISYQA 661
              AV +   QTIS  A
Sbjct: 668 AVQAVTVGASQTISVGA 684