Pairwise Alignments

Query, 1163 a.a., type VI secretion system tip protein VgrG from Vibrio cholerae E7946 ATCC 55056

Subject, 988 a.a., VgrG protein from Variovorax sp. SCN45

 Score =  252 bits (644), Expect = 9e-71
 Identities = 158/470 (33%), Positives = 241/470 (51%), Gaps = 8/470 (1%)

Query: 42  FRYEVQLASRVSNLTAEQMVDKRAELKLYRNSQLVQRVHGIVRAFSQGDIGHHHTFYQLT 101
           + +++ L    + + A+ ++ K A + +      V+ + GI   F        H+FY+L 
Sbjct: 30  YAFDIDLLGSSNGIDAKALLGKAATVSVETEGG-VRYLGGIATRFGLQQEDARHSFYRLR 88

Query: 102 LVPALERLSLRHNSRIFQKQTVPEILSILLQEMGINDYAFALKRDGVQREFCVQYRESDI 161
           + P L   +LR + RIFQ ++VP+IL+ +L   G        + D  + ++CVQY ESD 
Sbjct: 89  MRPWLWLATLRSDFRIFQAKSVPDILTEVLGPYGYPVEQKLSRADYRRWDYCVQYHESDF 148

Query: 162 DFLHRLAAEEGLVYSFVHEAGKHTLYFSD-ASDSLSKLP--EPIPYNALV-GGAIDTPYI 217
           DF+ RL   EG+ Y F HE  +H L F+D  + S S LP  E + Y+ L   G      I
Sbjct: 149 DFVSRLCELEGIYYYFRHEQSQHVLVFADDMAGSHSPLPGGEEVRYHPLEKSGMGQRERI 208

Query: 218 HGLTYRTQAEVSEVQLKDYSFKKPAYSFLQTVQGTELDYQQTRYQHFDAPGRYKDDVNGA 277
           +      +         DY F+KP    L  ++     +    Y++++ PG +    +G 
Sbjct: 209 YAWEIAEEVRPGHHYNDDYDFEKPKAE-LSHLRQMPPGHDHDSYENYEWPGGFVQHGDGE 267

Query: 278 AFSQIRLDYLRRHAHTATGQSNEPLLRAGYKFDLQEHLDPAMNRDWVVVSIN-HQGEQPQ 336
            +++IR +      +  TG++N   L  G+   L  H     NR +++VS++ H  E  Q
Sbjct: 268 TYARIRNEEQLSQRNRVTGRANLRELATGHTLRLTGHPKADQNRQYLLVSVSYHLQENLQ 327

Query: 337 ALQEDGGSGATTYSNQFSLIPGHLHWR-AEPQPKPQVDGPMIATVVGPEGEEIFCDEHGR 395
           A +   G+  +     F   P    WR A   PKP+  GP  A VVGP GE+I+ D++GR
Sbjct: 328 ASEGAEGTEGSVQRFAFDAQPTSYPWRPARTTPKPRTRGPQTAMVVGPAGEQIWTDQYGR 387

Query: 396 VKIHFPWDRYSNGNEQSSCWVRVSQGWAGSQYGFIAIPRIGHEVIVEFLNGDPDQPIITG 455
           +K+ F WDR    NE SSCWVRVS  WAG+ +G  ++PRIG EVIV+FLNGDPD PI+TG
Sbjct: 388 IKVQFHWDRIGKENENSSCWVRVSTAWAGATFGMTSVPRIGMEVIVDFLNGDPDYPIVTG 447

Query: 456 RTYHATNTPPYTLPEHKTKTVLRTETHQGEGFNELSFEDQAGKEQIYLHA 505
             ++A   P + LP  K  + +R+    G   N L  +D  GK Q  L +
Sbjct: 448 CVHNADTMPAWELPGQKHLSGIRSRELGGGRGNHLVLDDTQGKIQAQLRS 497



 Score = 26.9 bits (58), Expect = 0.008
 Identities = 36/121 (29%), Positives = 48/121 (39%), Gaps = 13/121 (10%)

Query: 585 AGQKVVIEAG---SEITVKAGGSFVKVDPAGVHLSGALVNLNSGGSAGSGSGF----GGA 637
           AG K +   G   S +    GGS   +  AG    G+L +L  GG+A SG G     GGA
Sbjct: 859 AGDKALDSQGGGSSFLGGPGGGSMAGLASAGADAVGSLGSL--GGAASSGLGLLGQAGGA 916

Query: 638 MPALPGGLEPAVALA---PPQTISYQALLQAEQANVPAVKVCPLAAQEATPAVNSITPPP 694
           +    GGL   V  A     Q +     +Q   A     +V   A   A   V ++ P  
Sbjct: 917 L-GKAGGLVNQVGQAAGTAQQAVGAVQAIQQGGAKTLLGQVGQTATGMAAQTVGAMVPRL 975

Query: 695 P 695
           P
Sbjct: 976 P 976