Pairwise Alignments

Query, 1163 a.a., type VI secretion system tip protein VgrG from Vibrio cholerae E7946 ATCC 55056

Subject, 771 a.a., type 6 secretion system protein from Pseudomonas putida KT2440

 Score =  443 bits (1140), Expect = e-128
 Identities = 241/618 (38%), Positives = 349/618 (56%), Gaps = 34/618 (5%)

Query: 42  FRYEVQLASRVSNLTAEQMVDKRAELKLYRNSQLVQRVHGIVRAFSQGDIGHHHTFYQLT 101
           F   ++L S  S++    ++DK A   LY   + ++ VHG+V AFSQG+ G   T Y   
Sbjct: 34  FVLNLELVSYESDIDFGHVLDKPALFTLYSADRPLRHVHGLVSAFSQGETGFCRTRYHAV 93

Query: 102 LVPALERLSLRHNSRIFQKQTVPEILSILLQEMGINDYAFALKRDGVQREFCVQYRESDI 161
           + P L R  LR N RIFQ++TVP+IL ++ +  GI  +          REFCVQ  E+D+
Sbjct: 94  VEPQLARARLRSNWRIFQQKTVPQILELMFKRQGITRFELKSSAQHQVREFCVQAGETDL 153

Query: 162 DFLHRLAAEEGLVYSFVHEAGKHTLYFSDASDSLSKL---------------------PE 200
           DF+HRLAAEEG VY F H A +HTL  +D   S   L                     P+
Sbjct: 154 DFIHRLAAEEGFVYRFEHCARQHTLIVTDRLLSFGLLSRGALKAEDDEALWLDEDDVGPD 213

Query: 201 PIPYNALVGGAIDTPYIHGLTYRTQAEVSEVQLKDYSFKKPAYSFLQTVQGTELDYQQTR 260
            + Y+A  GG      +  L Y  Q   +    +DY+F  PAY      Q + + +Q   
Sbjct: 214 KVLYHASSGGDQARACLRRLRYCEQVRTARQVQRDYTFTNPAYRQEHKAQTSGVTHQSLD 273

Query: 261 YQHFDAPGRYKDDVNGAAFSQIRLDYLRRHAHTATGQSNEPLLRAGYKFDLQEHLDPAMN 320
           Y+ FD PGRYK D  G  F++ RL  LR  A  A  Q ++  L+ G  F L  H    +N
Sbjct: 274 YERFDYPGRYKRDAVGKPFTETRLTALRHDACLAEVQGDDVRLQTGLSFTLVGHPREDLN 333

Query: 321 RDWVVVSINHQGEQPQALQED--GGSGATTYSNQFSLIPGHLHWRAEPQPKPQVDGPMIA 378
             W V+S+ H+G Q  +LQE+  G    T Y N   L+ G   WR  P  KP++DGP +A
Sbjct: 334 VHWRVISLCHEGTQLTSLQEEAAGAEQGTRYVNDALLVQGMAEWRPAPMAKPRIDGPHMA 393

Query: 379 TVVGPEGEEIFCDEHGRVKIHFPWDRYSNGNEQSSCWVRVSQGWAGSQYGFIAIPRIGHE 438
           TVVGP GEEI+CDE GRVK+ FPWDR S  NE SSCWV VSQGWAG  +G +AIPRIG +
Sbjct: 394 TVVGPPGEEIYCDEWGRVKVSFPWDRESKNNEFSSCWVWVSQGWAGGSWGSMAIPRIGQD 453

Query: 439 VIVEFLNGDPDQPIITGRTYHATNTPPYTLPEHKTKTVLRTETHQGEGFNELSFEDQAGK 498
           VIV+++NGDPDQP+ITGRTY     PPY LP+HKT+  ++++TH+G+GFNEL FED+ G+
Sbjct: 454 VIVQYVNGDPDQPMITGRTYCGDQLPPYDLPDHKTRMTIKSQTHKGDGFNELRFEDELGR 513

Query: 499 EQIYLHAQKDFDGLIENDHTTVIRHDHHLTVENDQFTQIKHNQHLTVEWESREAVTGEQV 558
           +++++HA++D + +++++ TT+I +D    VE+D+   I  N+ + V    RE V   +V
Sbjct: 514 QEVFIHAERDQNNVVKHNETTLIGNDRSERVEHDEVVDIGGNRSVKVGASKRETVALGKV 573

Query: 559 --------LSIEGSLHVKTGKVWVNEAGTEIHVKAGQKVVIEAGSEITVKAGGSFVKVD- 609
                   L++ G+L V  G     +   +  V+ G ++ ++A  ++++ +    V +D 
Sbjct: 574 ESIGLGKSLAVGGALSVMVGLEATEQVALDKRVQVGGQLRVDADEDVSITSHHGHVHIDS 633

Query: 610 --PAGVHLSGALVNLNSG 625
                +   GA + L+ G
Sbjct: 634 RTSLTLSCGGAFIKLSDG 651