Pairwise Alignments

Query, 1163 a.a., type VI secretion system tip protein VgrG from Vibrio cholerae E7946 ATCC 55056

Subject, 722 a.a., type 6 secretion system protein from Pseudomonas putida KT2440

 Score =  445 bits (1145), Expect = e-129
 Identities = 229/565 (40%), Positives = 326/565 (57%), Gaps = 24/565 (4%)

Query: 42  FRYEVQLASRVSNLTAEQMVDKRAELKLYRNSQLVQRVHGIVRAFSQGDIGHHHTFYQLT 101
           F  E++L S  +++    ++DK     +    + V+ VHG+V +FSQG+ G + T+Y   
Sbjct: 35  FELELKLISFENDIDFGHLLDKPVLFTILDGERPVRYVHGLVSSFSQGESGFYRTYYHAL 94

Query: 102 LVPALERLSLRHNSRIFQKQTVPEILSILLQEMGINDYAFALKRDGVQREFCVQYRESDI 161
           + P L R  LR N RIFQ +TVP+IL ++L+  GI+ Y      D   REFCVQ  E+D+
Sbjct: 95  VEPQLARARLRSNWRIFQHKTVPQILELMLKRQGIDQYELRASMDHQVREFCVQAGETDL 154

Query: 162 DFLHRLAAEEGLVYSFVHEAGKHTLYFSDASDSLSKL----------------------P 199
            F+ RLAAEEG VY F H    H L  +D   SL  +                      P
Sbjct: 155 AFIARLAAEEGFVYRFAHSEKLHKLIITDRLQSLGLISHGAIKADHEDEGFGDDDEPVGP 214

Query: 200 EPIPYNALVGGAIDTPYIHGLTYRTQAEVSEVQLKDYSFKKPAYSFLQTVQGTELDYQQT 259
           + + Y A  GG    P +  L Y  Q   +    +D++F  PAY       G  L++Q  
Sbjct: 215 DSVLYQANSGGDQAIPCLRRLRYSEQVRTARQVQRDHTFTHPAYRQEHRAAGPFLEHQSK 274

Query: 260 RYQHFDAPGRYKDDVNGAAFSQIRLDYLRRHAHTATGQSNEPLLRAGYKFDLQEHLDPAM 319
            Y++FD PGRYK D  G  F++ R+  LR     A  Q ++  L+ G  F L +H    +
Sbjct: 275 DYEYFDYPGRYKRDAVGKPFTENRITALRHDVRIAEVQGDDVRLQPGLSFTLTDHPREDL 334

Query: 320 NRDWVVVSINHQGEQPQALQED--GGSGATTYSNQFSLIPGHLHWRAEPQPKPQVDGPMI 377
           N  W V +++H+G QP +LQE+  G    T Y  +  L+PG   WR  P PKP+VDGP +
Sbjct: 335 NVHWRVSTVHHEGSQPTSLQEEAAGADQGTRYEQKAVLVPGRTEWRPAPLPKPRVDGPHM 394

Query: 378 ATVVGPEGEEIFCDEHGRVKIHFPWDRYSNGNEQSSCWVRVSQGWAGSQYGFIAIPRIGH 437
           ATVVGP GEEI+CDE GRVK+ FPWDR S  NE SSCW+RVSQGWAG  +G +AIPRIG 
Sbjct: 395 ATVVGPPGEEIYCDEWGRVKVSFPWDRESQNNEFSSCWLRVSQGWAGGSWGSMAIPRIGQ 454

Query: 438 EVIVEFLNGDPDQPIITGRTYHATNTPPYTLPEHKTKTVLRTETHQGEGFNELSFEDQAG 497
           +VI+ ++NGDPDQP+ITGRTY     PPY LP HKT+  ++++TH+G+GFNEL FED+ G
Sbjct: 455 DVIIHYVNGDPDQPMITGRTYCGNQLPPYDLPRHKTRMTIKSQTHKGDGFNELRFEDELG 514

Query: 498 KEQIYLHAQKDFDGLIENDHTTVIRHDHHLTVENDQFTQIKHNQHLTVEWESREAVTGEQ 557
           +E++++HAQ+D + ++++D TT + +D    V+ND+   I H++  TV  + R  +  + 
Sbjct: 515 QEEVFIHAQRDQNNVVKHDETTQVGNDRKEQVDNDESILIGHDRTETVGNDERITIGQDA 574

Query: 558 VLSIEGSLHVKTGKVWVNEAGTEIH 582
            L I  +  ++  K  V   G   H
Sbjct: 575 ALDIGRNHTIRIAKDRVENIGNHRH 599