Pairwise Alignments

Query, 1163 a.a., type VI secretion system tip protein VgrG from Vibrio cholerae E7946 ATCC 55056

Subject, 729 a.a., VgrG protein from Salmonella enterica subsp. enterica serovar Typhimurium str. MS1868

 Score =  258 bits (658), Expect = 2e-72
 Identities = 184/609 (30%), Positives = 292/609 (47%), Gaps = 49/609 (8%)

Query: 5   AYSIEVEG--LEDETLVVRGFHGQESLSNSVFLGQACYGFRYEVQL----------ASRV 52
           A+++ V G  +    L+     G E+LS           F Y VQL           S  
Sbjct: 97  AHNVTVSGSAVPPGALLFASLDGGETLSEL---------FSYVVQLKTPDTLNLGYVSPA 147

Query: 53  SNLTAEQMVDKRAELKLYRNSQLVQRVHGIVRAFSQGDIGHH--HTFYQLTLVPALERLS 110
           +NL  + MV K   + +  +    + + G+V A     +GH      Y+L + P ++ L+
Sbjct: 148 ANLPLKPMVGKDLCVNIELDGGGKRHISGLVTAARV--VGHEGRSVTYELRMEPWVKLLT 205

Query: 111 LRHNSRIFQKQTVPEILSILLQEMGINDYAFALKRDGVQ----REFCVQYRESDIDFLHR 166
              + + FQ +TV +IL  +L E     Y + +++  V+    R + VQY E+D DFL R
Sbjct: 206 HTSDYKAFQNKTVVDILDEVLAE-----YPYPVEKRLVESYPVRTWQVQYGETDFDFLQR 260

Query: 167 LAAEEGLVYSFVHEAGKHTLYFSDASDSLSKLPE-PIPYNALVGGAIDTPYIHGLTYRTQ 225
           L  E G+ + F H    HTL  +DA  +    P+ P+      G  +D  +IH +T    
Sbjct: 261 LMQEWGIYWWFEHSEDSHTLVLADAISAHKACPDSPLVEWHQEGLKLDKEFIHTITANES 320

Query: 226 AEVSEVQLKDYSFKKPAYSFLQTVQGTELDYQQTRYQHFDAPGRYKDDVNGAAFSQIRLD 285
               +  L D+ F KP      TV         T Y+H++ PG Y D   G   ++IR++
Sbjct: 321 LRTGQWVLDDFDFTKPRSLLANTVANPRETGHAT-YEHYEWPGDYFDKSEGEMLTRIRME 379

Query: 286 YLRRHAHTATGQSNEPLLRAGYKFDLQEHLDPAMNRDWVVVSINHQGEQPQALQEDGGSG 345
             R       G  N   L  GY F L+ +    +N++++++       Q  A Q  G   
Sbjct: 380 AQRSPGSRVLGGGNIRTLMTGYTFTLENYPTAEVNQEYLLMQ-TLLFVQDNA-QHSGQDQ 437

Query: 346 ATTYSNQFSLIPGHLHWRAEPQ-PKPQVDGPMIATVVGPEGEEIFCDEHGRVKIHFPWDR 404
             T+S +F L P    +R +    KP   GP  A V GP G+EI+ D++GRVK+ F WDR
Sbjct: 438 HFTFSTRFELHPTREVFRPQRTVSKPHTKGPQSAIVTGPAGQEIWTDQYGRVKVQFGWDR 497

Query: 405 YSNGNEQSSCWVRVSQGWAGSQYGFIAIPRIGHEVIVEFLNGDPDQPIITGRTYHATNTP 464
           Y   +E SSCW+RVS  WAG  +G I IPRIG EV+V+F NGDPD PII GRTY+    P
Sbjct: 498 YGKMDENSSCWIRVSYPWAGKGFGMIQIPRIGQEVLVDFKNGDPDLPIIVGRTYNQDTMP 557

Query: 465 PYTLPEHKTKTVLRTETHQG--EGFNELSFEDQAGKEQIYLHAQKDFDGLIENDHTTVIR 522
           P+ LP   +++ + + +  G     N L F+D+ G E++  HA+KD +  ++N+ T  + 
Sbjct: 558 PWGLPGMASQSGIFSHSLYGGPTNGNMLRFDDKTGAEEVKFHAEKDLNTTVKNNETHTVM 617

Query: 523 HDHHLTVENDQFTQIKHNQHLTVEWESREAVTGEQVLSIEGSLHVKTGKVWVNEAGTEIH 582
            D   T+  ++   I  +++ T        VT    LS++ +  +  G  +  + G +  
Sbjct: 618 VDRTKTIIKNETNSIGEDRNTT--------VTKNDGLSVKLAQTINIGTTYRLDVGDQFT 669

Query: 583 VKAGQKVVI 591
           ++ G   ++
Sbjct: 670 LRCGNAALV 678