Pairwise Alignments

Query, 172 a.a., type VI secretion system tube protein Hcp from Vibrio cholerae E7946 ATCC 55056

Subject, 160 a.a., type VI secretion system protein, Hcp family from Escherichia coli ECRC62

 Score = 85.1 bits (209), Expect = 5e-22
 Identities = 51/167 (30%), Positives = 80/167 (47%), Gaps = 13/167 (7%)

Query: 6   YISIEGQTQGLITAGACTADSIGDSFVEGHEDEMLVQQFDHVVTVPTDPQSGQPSGQRV- 64
           Y+S+ G+TQGLI+AG  T DS+G+     H+D+++V    H ++            Q V 
Sbjct: 6   YLSLSGETQGLISAGCSTLDSVGNKAQPEHKDQIMVYALMHSIS----------RSQNVN 55

Query: 65  HKPFKFTVALNKAVPLLYNALSSGEKLKTVELKWYRTSIEGKQENFFTTKLENASIVDIH 124
           H     T  ++K+ PLL  ALS  EK+   E   YRTS  G  + ++   L  A I  I 
Sbjct: 56  HHELIITKPVDKSSPLLAKALSDNEKMAICEFILYRTSKAGIYQPYYKINLSKARISSID 115

Query: 125 CEMPHCQDPAKSDFTQNVTVSLSYRKITWDHVNAGTSGSDDWRKPIE 171
              PH     + +      ++  Y  I+W+H  AGT+    W+  ++
Sbjct: 116 FVTPHA--VLEKELEPQERIAFIYEDISWEHTLAGTNAMSKWQDRVQ 160