Pairwise Alignments

Query, 578 a.a., methyl-accepting chemotaxis protein from Vibrio cholerae E7946 ATCC 55056

Subject, 541 a.a., chemotaxis protein from Pseudomonas simiae WCS417

 Score =  204 bits (519), Expect = 7e-57
 Identities = 124/361 (34%), Positives = 207/361 (57%), Gaps = 5/361 (1%)

Query: 220 DQLN--WKITLALLVCASVIIVASVTMLHVSFK-PLSRLNTLVANLSQGNGDLTQRLAVE 276
           DQ N  + + ++LLV A+++ +    +L  S   P+++       +++GN  LT+ + V+
Sbjct: 183 DQYNMAFNMVVSLLVIATLLTLLFAWLLTRSITLPIAQALEAAEEVAEGN--LTRPIKVD 240

Query: 277 SKDEIGQICNSINLFIEKLQQMFIDVADSSKEIDRAVVHLSNQARSNLNTLNQHTQETEQ 336
             DE G++  ++    +KL+     +A S+ ++  A   L+     +   L Q   E EQ
Sbjct: 241 GSDEAGRLLAAMAKMQDKLRDTLQRIAGSATQLASAAEELNAVTDESARGLTQQNNEIEQ 300

Query: 337 AITAIEEMSASAGSIAQSADDAALLTERTNRYADESKQTVTEAVNSVNGLVNQVSSMAET 396
           A TA+ EM+++   +A++A   +  +      A + +  V E V+++  +   V + A  
Sbjct: 301 AATAVNEMTSAVEEVARNAVSTSEASRNATTSAGDGRDLVQETVSAIERMSGDVQATATL 360

Query: 397 ITRMSEDTKQINSVLQVIGAIAEQTNLLALNAAIEAARAGEQGRGFAVVADEVRALASRT 456
           I  ++ +++ I  VL VI  +A+QTNLLALNAAIEAARAGE GRGFAVVADEVRALA RT
Sbjct: 361 IGDLANESRDIGKVLDVIRGLADQTNLLALNAAIEAARAGEAGRGFAVVADEVRALAHRT 420

Query: 457 QQSTSQINDMLATLKTTTENVVKEMDSTRIHCEETAERTNHVMDSLNVVTDSVAEMNNLN 516
           QQSTS+I  M+ +++  TE+ V  M ++    E T         SL+ +  ++ E+N  N
Sbjct: 421 QQSTSEIERMIGSIQAGTEHAVDSMRNSTERAESTLNIAKGAGMSLDTINTAIVEINERN 480

Query: 517 TLIATSAMEQRQVTHEVSKNMAAIQEMVRKLNMNAAQVTSVSNELQNTSHALSDVVGRFR 576
            +IA++A EQ QV  EV +N+  I+++  +    A+Q ++ S+EL   +  L+ +VGRFR
Sbjct: 481 LVIASAAEEQAQVAREVDRNLVNIRDLSVQSATGASQTSAASSELSRLAVDLNGMVGRFR 540

Query: 577 V 577
           +
Sbjct: 541 L 541