Pairwise Alignments

Query, 578 a.a., methyl-accepting chemotaxis protein from Vibrio cholerae E7946 ATCC 55056

Subject, 626 a.a., methyl-accepting chemotaxis protein from Vibrio cholerae E7946 ATCC 55056

 Score =  199 bits (505), Expect = 4e-55
 Identities = 162/635 (25%), Positives = 292/635 (45%), Gaps = 85/635 (13%)

Query: 4   LSFKNKIIALIIAII-SLTIITSYFSVNYFISDYIKQADSQNITHNIDLMQRKLENELNS 62
           + F  K++ +  +II +++ I +YF + +  ++Y+ +     I+  +D ++ K+   + S
Sbjct: 1   MKFSIKLLMIFTSIIITISSILTYFQM-HGTNEYLDRTIKDTISETLDSLEDKINLSIES 59

Query: 63  KLALAQSLN--FSMMDIGETKASS----GFNKIIKIVN--GYAFDDTGNMSEEDAQQYV- 113
           K+ +++S+   +  +  GE+  S       N +  +    GYA + TG +   D    V 
Sbjct: 60  KVDVSKSVIDIYENLLEGESPLSKFKDVDVNHLSNVFQLFGYADERTGEIITNDPNFKVP 119

Query: 114 --------------------SLAENHGDA------VVVSPVTFNEGQPTITFSVKRFDES 147
                               SL+E + D       V  S   +N+   T           
Sbjct: 120 TGFDPRTRSWYLNAKKLNTFSLSEPYVDLITEKLMVTTSAPIYNKNDLT----------G 169

Query: 148 VDFFVFNLSAFSQMMTDYAT--EGSFAELMANGNVIFS---------------------- 183
           V FF   L    +++  Y     G+   +  +G +IF                       
Sbjct: 170 VIFFDIPLDDVQELIKSYNPFDAGTIFIVDNSGKIIFGNKNDISGKNLFGDFDSFPLSVS 229

Query: 184 -----DKHGVNLTPITRPINFAGQDWQLIGYIDLTAIQANTDQLNWKITLALLVCASVII 238
                DK+GVN   + +  +F G  W L+  ID    +++   L        ++ ASV  
Sbjct: 230 ESKTKDKNGVNYDVLIKMSDFGG--WNLVSIIDHDKARSDIITLRNNSIFTAVILASVFF 287

Query: 239 VASVTMLHVSFKPLSRLNTLVANLSQGNGDLTQRLAVESKDEIGQICNSINLFIEKLQQM 298
              +  + +  KPL +L   + N+S G+ DLT R+   +  E  +I NS N+F+  LQ +
Sbjct: 288 AILLFTMRLMLKPLHQLTDAMVNISSGSADLTVRIPNSTDQEFSKIINSFNIFVGNLQSI 347

Query: 299 FIDVADSSKEIDRAVVHLSNQARSNLNTLNQHTQETEQAITAIEEMSASAGSIAQSADDA 358
             +V  +S++I+              N++    +E +   +++ EM A++  IAQ   +A
Sbjct: 348 VSEVKMNSEKINCITTETQELVEVCNNSVADQYRELDMLASSMNEMVATSNQIAQITSEA 407

Query: 359 ALLTERTNRYADESKQTVTEAVNSVNGLVNQVSSMAETITRMSEDTKQINSVLQVIGAIA 418
           + +T + N   +E    V+    SV  LV ++      I  ++  T+ I+ +L+ I  IA
Sbjct: 408 SEITSKINGQVNEGVGAVSSVTESVGNLVEKLDKTKSVIQDLNRQTQNIDVILKAINDIA 467

Query: 419 EQTNLLALNAAIEAARAGEQGRGFAVVADEVRALASRTQQSTSQINDMLATLKTTTENVV 478
           +QTNLLALNAAIEAARAGE GRGFAVVADEVR+LA +TQ+ST  I  ++  L+  +   V
Sbjct: 468 DQTNLLALNAAIEAARAGENGRGFAVVADEVRSLAIKTQESTKNIGSIIHILQENSLLSV 527

Query: 479 KEMDSTRIHCEETAERTNHVMDSLNVVTDSVAEMNNLNTLIATSAMEQRQVTHEVSKNMA 538
             MD +     ET   +      L+ ++ SV ++ ++   +AT+A EQ  V+ E++ N  
Sbjct: 528 HVMDESFNIASETMTISADSKQCLDNISQSVIQIVDITNQVATAAYEQSHVSEEINSNSI 587

Query: 539 AIQEMVRKLNMNAAQVTSVSNELQNTSHALSDVVG 573
           +I++        A  ++S+ N++   +++   ++G
Sbjct: 588 SIKD-------KADTLSSLGNKISQQAYSQKALIG 615