Pairwise Alignments

Query, 578 a.a., methyl-accepting chemotaxis protein from Vibrio cholerae E7946 ATCC 55056

Subject, 647 a.a., Methyl-accepting chemotaxis transducer from Pseudomonas putida KT2440

 Score =  201 bits (510), Expect = 1e-55
 Identities = 112/351 (31%), Positives = 204/351 (58%), Gaps = 3/351 (0%)

Query: 227 TLALLVCASVIIVASVTMLHVSFKPLSRLNTLVANLSQGNGDLTQRLAVESKDEIGQICN 286
           ++ALL      + A +  L ++ +PL +   + A +++G  DL+Q   V+ +DE+GQ+  
Sbjct: 300 SVALLAMVVGALAAWLITLQIT-QPLRQTLAVAARIAKG--DLSQVDTVQRRDEMGQLQT 356

Query: 287 SINLFIEKLQQMFIDVADSSKEIDRAVVHLSNQARSNLNTLNQHTQETEQAITAIEEMSA 346
           S+      L+ +   +     ++ +A   L+  +      +NQ  +ET+Q  TA+ +MSA
Sbjct: 357 SMREMTLSLRDLIGGIDQGVGQLSQAATQLAASSEDTKLRINQQREETDQVATAMNQMSA 416

Query: 347 SAGSIAQSADDAALLTERTNRYADESKQTVTEAVNSVNGLVNQVSSMAETITRMSEDTKQ 406
           +   +AQ+A+ A+L     ++ A    Q V+EA+  +  L  Q+      +  ++ ++++
Sbjct: 417 TVQEVAQNAEQASLAATNADQQAQVGDQVVSEAIGRIEQLAGQMDHCLAAMQHLAGESQR 476

Query: 407 INSVLQVIGAIAEQTNLLALNAAIEAARAGEQGRGFAVVADEVRALASRTQQSTSQINDM 466
           I S+L VI +++EQTNLLALNAAIEAARAGE GRGFAVVADEVR LA RT  +T +I  +
Sbjct: 477 IGSILDVIKSVSEQTNLLALNAAIEAARAGEAGRGFAVVADEVRGLAQRTSTATEEIGQL 536

Query: 467 LATLKTTTENVVKEMDSTRIHCEETAERTNHVMDSLNVVTDSVAEMNNLNTLIATSAMEQ 526
           + +L   T+ V + +DS++   E++ E +     +L+ +TD+V+ +  +N  IAT++ EQ
Sbjct: 537 IDSLHNGTDEVTRLLDSSKSLTEQSVELSRRAGHALSQITDTVSSIQGMNQQIATASEEQ 596

Query: 527 RQVTHEVSKNMAAIQEMVRKLNMNAAQVTSVSNELQNTSHALSDVVGRFRV 577
             V  ++++++  ++++  + +  + Q  + S EL+     L  +VGRF +
Sbjct: 597 SVVAEQINRSVINVRDVSDQTSAASEQTAASSGELEQLGQQLRGMVGRFSI 647



 Score = 33.9 bits (76), Expect = 2e-05
 Identities = 23/119 (19%), Positives = 59/119 (49%), Gaps = 9/119 (7%)

Query: 461 SQINDMLATLKTTTENVVKEMDSTRIHCEETAE-RTNHVMDSLNVVTDSVAEMNNLNTLI 519
           SQ    +  +   T+++  E  + R+  ++ ++ R ++++D LN +  ++ + +N++   
Sbjct: 47  SQQLSEIGLINDLTKDLRAERITYRVLNDDASKARISNILDQLNSMLTTLQQRSNVD--- 103

Query: 520 ATSAMEQRQVTHEVSKNMAAIQEMVRKLNMNAAQVTSVSNELQNTSHALSDVVGRFRVQ 578
                E RQ+  E    +  +++   +L  + A   ++   LQ+  HALS+ + + + Q
Sbjct: 104 -----ESRQLLTEKMALLQRLRDNFSELQRSVASRVALREALQSQEHALSEAIDQLQTQ 157



 Score = 25.0 bits (53), Expect = 0.010
 Identities = 26/124 (20%), Positives = 52/124 (41%), Gaps = 6/124 (4%)

Query: 307 KEIDRAVVHLSNQARSNLNTLNQHTQE--TEQAITAIEEMSASAGSIAQSAD--DAALLT 362
           + +D A+V   +Q  S +  +N  T++   E+    +    AS   I+   D  ++ L T
Sbjct: 38  RALDGAIVR--SQQLSEIGLINDLTKDLRAERITYRVLNDDASKARISNILDQLNSMLTT 95

Query: 363 ERTNRYADESKQTVTEAVNSVNGLVNQVSSMAETITRMSEDTKQINSVLQVIGAIAEQTN 422
            +     DES+Q +TE +  +  L +  S +  ++       + + S    +    +Q  
Sbjct: 96  LQQRSNVDESRQLLTEKMALLQRLRDNFSELQRSVASRVALREALQSQEHALSEAIDQLQ 155

Query: 423 LLAL 426
             AL
Sbjct: 156 TQAL 159