Pairwise Alignments

Query, 578 a.a., methyl-accepting chemotaxis protein from Vibrio cholerae E7946 ATCC 55056

Subject, 643 a.a., Methyl-accepting chemotaxis protein PctB from Pseudomonas putida KT2440

 Score =  209 bits (531), Expect = 4e-58
 Identities = 161/629 (25%), Positives = 291/629 (46%), Gaps = 58/629 (9%)

Query: 4   LSFKNKIIALIIAIISLTIITSYFSVNYFISDYIKQADSQNITHNIDLMQRKLENELNSK 63
           L F++KI+     ++ L         +Y   + I+Q    ++  +  L    ++N ++ +
Sbjct: 18  LKFRHKILLSACGVVVLAFALFTLYNDYLQRNTIRQNIEASVQQSGALTASSVQNWMSGR 77

Query: 64  LALAQSLNFSMMDIGETKASSGFNKIIK---IVNGYAFDDTGNMSEE-----DAQQ---- 111
           + + ++L     DIG+  A      +I+       + F   G  + E     DAQ     
Sbjct: 78  ILVLENL---AQDIGQQGAGDTLAGLIEQPSYTRNFLFTYLGQANGEFTQRPDAQMPAGY 134

Query: 112 ------YVSLAENHGDAVVVSPVTFNEGQPTITFSV----KRFDESVDFFVFNLSAFSQM 161
                 +   A N G  V+ +P     G   +T +     KR  E +     +++  + +
Sbjct: 135 DPRQRPWYGAAANAGQTVLTAPYQGAVGGLMVTIATPVKSKRNGELIGVVGGDVTLDTLV 194

Query: 162 ----MTDYATEGSFAELMANGNVIFS---DKHGVNLTPI-----------TRPINFAGQD 203
                 D+   G      ANG VI S   D+   NL  I            + +   GQD
Sbjct: 195 EIINSVDFGGIGHAFLADANGQVIVSPNKDQVMKNLKDIYPGSNLRVAAGMQDVTLDGQD 254

Query: 204 ---------------WQLIGYIDLTAIQANTDQLNWKITLALLVCASVIIVASVTMLHVS 248
                          W +   ID     A   Q      +A+L+  + I      ++ V 
Sbjct: 255 RIISFAPVAGLPSAQWYIGLSIDRDKAYAALSQFRTSAIIAMLIAVAAIAGLLGLLIPVL 314

Query: 249 FKPLSRLNTLVANLSQGNGDLTQRLAVESKDEIGQICNSINLFIEKLQQMFIDVADSSKE 308
             PL+ +   + ++++G GDLT+RLAV++KDE G++  S N F+E++     +V+ +++ 
Sbjct: 315 MSPLTTMGRAMRDIAEGEGDLTRRLAVQNKDEFGELATSFNRFVERIHASISEVSSATRL 374

Query: 309 IDRAVVHLSNQARSNLNTLNQHTQETEQAITAIEEMSASAGSIAQSADDAALLTERTNRY 368
           +      + + + +++    + +  T     AI E+ A+   IA++A DA+      +  
Sbjct: 375 VHDLSEKVVSASNASIIGSEEQSMRTNSVAAAINELGAATQEIARNAADASQHASGASEQ 434

Query: 369 ADESKQTVTEAVNSVNGLVNQVSSMAETITRMSEDTKQINSVLQVIGAIAEQTNLLALNA 428
           A   ++ V EA++++  L  ++S     I  ++  T +I  +L VI  I++QTNLLALNA
Sbjct: 435 AHGGREVVEEAISAMTALSQRISESCAQIETLNASTDEIGKILDVIKGISQQTNLLALNA 494

Query: 429 AIEAARAGEQGRGFAVVADEVRALASRTQQSTSQINDMLATLKTTTENVVKEMDSTRIHC 488
           AIEAARAGE GRGFAVVADEVR LA RTQ+S  +I+ M+ +L+  +   V  M+++++  
Sbjct: 495 AIEAARAGEAGRGFAVVADEVRNLAHRTQESAEEIHRMITSLQVGSREAVHTMNTSQVSS 554

Query: 489 EETAERTNHVMDSLNVVTDSVAEMNNLNTLIATSAMEQRQVTHEVSKNMAAIQEMVRKLN 548
           E+T +  N   + L  VT  + E++ +N  +AT+  EQ  V   ++ ++  I  + ++  
Sbjct: 555 EQTVQVANQAGERLASVTQRIGEIDGMNQSVATATEEQTAVVESLNLDITQINALNQQGV 614

Query: 549 MNAAQVTSVSNELQNTSHALSDVVGRFRV 577
            N  +     ++L   +  L  +VG FR+
Sbjct: 615 ENLNETLRHCDQLAQQAGRLKQLVGSFRI 643