Pairwise Alignments

Query, 578 a.a., methyl-accepting chemotaxis protein from Vibrio cholerae E7946 ATCC 55056

Subject, 493 a.a., hypothetical protein from Pseudomonas sp. RS175

 Score =  204 bits (520), Expect = 5e-57
 Identities = 123/351 (35%), Positives = 198/351 (56%), Gaps = 3/351 (0%)

Query: 229 ALLVCASVIIVASVTMLHVSFKPLSRLNTL--VANLSQGNGDLTQRLAVESKDEIGQICN 286
           A+ V   ++ +   + L + F  LS+LNTL  V    +  GDL+ R+ +  +DE+GQ+  
Sbjct: 144 AVAVFVLMLAMLGASQLLIRFL-LSQLNTLKDVMLHVERTGDLSARVPLACRDEVGQMAA 202

Query: 287 SINLFIEKLQQMFIDVADSSKEIDRAVVHLSNQARSNLNTLNQHTQETEQAITAIEEMSA 346
           + N      Q++   VA +++++D     L++      + +     ET+QA TAI EMSA
Sbjct: 203 AFNAMQAGYQRVVDTVASTARQLDSGAARLASSMNDVRHGMLGQQSETDQAATAINEMSA 262

Query: 347 SAGSIAQSADDAALLTERTNRYADESKQTVTEAVNSVNGLVNQVSSMAETITRMSEDTKQ 406
           +   IAQ A     L++  +  A   ++ V     S+ GL + V   AE I R++ED+++
Sbjct: 263 TVYHIAQHAGATRDLSKTADTLAGNGREVVGRVQQSITGLSSGVQQTAEMIQRLAEDSQK 322

Query: 407 INSVLQVIGAIAEQTNLLALNAAIEAARAGEQGRGFAVVADEVRALASRTQQSTSQINDM 466
           IN V+ VI +IAEQTNLLALNAAIEAARAGE GRGFAVVADEVR LA R Q ST +I  M
Sbjct: 323 INGVVSVIHSIAEQTNLLALNAAIEAARAGEMGRGFAVVADEVRNLAKRVQTSTDEITGM 382

Query: 467 LATLKTTTENVVKEMDSTRIHCEETAERTNHVMDSLNVVTDSVAEMNNLNTLIATSAMEQ 526
           +A L+  T + V  M  +    ++  ++     ++L  +T +VA+M   NT IA +A +Q
Sbjct: 383 IAALQAGTRDAVDFMQESSYKADDCVQQAREAGEALEQITGAVAQMRESNTQIAVAAEQQ 442

Query: 527 RQVTHEVSKNMAAIQEMVRKLNMNAAQVTSVSNELQNTSHALSDVVGRFRV 577
            QV  E+++ + +I+++            + S++L   +  L+  +G+ ++
Sbjct: 443 SQVAEEMNRAVVSIRDVTENTVRQTVDSATTSHDLATLAGELNKAIGQLKL 493