Pairwise Alignments

Query, 511 a.a., MFS transporter from Vibrio cholerae E7946 ATCC 55056

Subject, 511 a.a., multidrug efflux transport system - permease subunit from Pseudomonas putida KT2440

 Score =  395 bits (1015), Expect = e-114
 Identities = 207/504 (41%), Positives = 317/504 (62%), Gaps = 8/504 (1%)

Query: 1   MSHNADNEMQPLSGWALFFGALCLAMANFLAILDTTIANVSVSNIAGSLGTSTSQGTYVI 60
           MS+NA  +  P S   L    + L++A F+ +LDTTIANV++  I+G+LG S  QGT+VI
Sbjct: 1   MSNNAAAQFTPPS---LLLTTIGLSLATFMQVLDTTIANVALPTISGNLGVSYEQGTWVI 57

Query: 61  TSYAVAEAISVPLTGWLASRFGSIRVFVTCFLLFGVFSLLCGLANSMSTLVMFRVLLGFV 120
           TS+AV+ AI++PLTGWL+ RFG +++F+   LLF + S LCG+A SM  LV FRVL G V
Sbjct: 58  TSFAVSNAIALPLTGWLSRRFGEVKLFIWATLLFVLASFLCGIAQSMPELVGFRVLQGVV 117

Query: 121 GGPLMPLSQTLMIRIFPKNKSHAAIGIWSMTTLVAPIMGPILGGVLCDQLSWPYIFFIKM 180
            GPL P++QTL+I ++P  K   A+ + +M T+VAPI GPILGG + D  SWP+IFFI +
Sbjct: 118 AGPLYPMTQTLLIAVYPPAKRGMALALLAMVTVVAPIAGPILGGWITDSYSWPWIFFINV 177

Query: 181 PFAIAAALLCWKLLKKFETKTTHSKIDKVGLALLVVWVAALQLMLDEGKDHDWFESSRIV 240
           P  + AA +  + ++     T+   +D +GL  L++ V ALQ++LD+G D DWFESS I+
Sbjct: 178 PIGLFAAAVVRQQMRTRPVVTSRQPMDYIGLLTLIIGVGALQVVLDKGNDLDWFESSFII 237

Query: 241 FLAVIAVIGFIAFLIWELTERNPVVDLKVFRHRGYSISMVTLSLAFGAFFSISVVTPLWL 300
             ++I+V+    F+IWELT+R+PVV+L++F HR + I  + L   +  FF I+++ P WL
Sbjct: 238 VGSLISVVFLAVFVIWELTDRHPVVNLRLFVHRNFRIGTIVLVGGYAGFFGINLILPQWL 297

Query: 301 QIYMGYTATISGHATASMGILAVFLAPIVANLSSKFDPRPFVFAGVMWLGLWT--FMRGF 358
           Q  MGYTAT +G A A +G+L V ++P V   + +FD R  V AG+ +L + T  +MR  
Sbjct: 298 QTQMGYTATWAGLAVAPIGLLPVIMSPFVGKYAHRFDLR--VLAGLAFLAIGTSCYMRAG 355

Query: 359 NTVDMTFSQISWPLFFQGIGMPLFFVPLTAIALGSVKPHEMESAAGLMNFIRTLSGAFAT 418
            T ++ F  ++    F GIG+ LFF+P  +I L  + PH++   +GL  F+RTL G+FA 
Sbjct: 356 FTSEVDFQHVALVQLFMGIGVALFFMPTLSILLSDLPPHQIADGSGLATFLRTLGGSFAA 415

Query: 419 SMINTSWEHETRYVHAELAGLTDKAGVATQ-AMQNSGMSAEQTRSAMDWILQNQSVMVAT 477
           S+    W       HA L+    +    T+  ++  G ++ Q+ + ++ IL  Q+ M++T
Sbjct: 416 SLTTWIWIRRADQHHAYLSEHISQFDPTTRHTLEQLGGASPQSYAQLEQILNGQAYMMST 475

Query: 478 NQLFIVIALIFVFAACMIWFAPKP 501
              F +++ +F     ++WFA  P
Sbjct: 476 VDYFTLMSWVFAGLILLVWFAKPP 499