Pairwise Alignments

Query, 511 a.a., MFS transporter from Vibrio cholerae E7946 ATCC 55056

Subject, 512 a.a., multidrug efflux MFS transporter permease subunit EmrB from Escherichia coli ECRC62

 Score =  407 bits (1047), Expect = e-118
 Identities = 207/500 (41%), Positives = 309/500 (61%), Gaps = 7/500 (1%)

Query: 8   EMQPLSGWALFFGALCLAMANFLAILDTTIANVSVSNIAGSLGTSTSQGTYVITSYAVAE 67
           + +PL G  L    + L++A F+ +LD+TIANV++  IAG+LG+S SQGT+VITS+ VA 
Sbjct: 3   QQKPLEGAQLVIMTIALSLATFMQVLDSTIANVAIPTIAGNLGSSLSQGTWVITSFGVAN 62

Query: 68  AISVPLTGWLASRFGSIRVFVTCFLLFGVFSLLCGLANSMSTLVMFRVLLGFVGGPLMPL 127
           AIS+PLTGWLA R G +++F+   + F + S  CG+++S++ L+ FRV+ G V GPL+PL
Sbjct: 63  AISIPLTGWLAKRVGEVKLFLWSTIAFAIASWACGVSSSLNMLIFFRVIQGIVAGPLIPL 122

Query: 128 SQTLMIRIFPKNKSHAAIGIWSMTTLVAPIMGPILGGVLCDQLSWPYIFFIKMPFAIAAA 187
           SQ+L++  +P  K   A+ +WSMT +VAPI GPILGG + D   W +IFFI +P  +A  
Sbjct: 123 SQSLLLNNYPPAKRSIALALWSMTVIVAPICGPILGGYISDNYHWGWIFFINVPIGVAVV 182

Query: 188 LLCWKLLKKFETKTTHSKIDKVGLALLVVWVAALQLMLDEGKDHDWFESSRIVFLAVIAV 247
           L+  + L+  ET+T   +ID VGLALLV+ + +LQ+MLD GK+ DWF S  I+ L V+AV
Sbjct: 183 LMTLQTLRGRETRTERRRIDAVGLALLVIGIGSLQIMLDRGKELDWFSSQEIIILTVVAV 242

Query: 248 IGFIAFLIWELTERNPVVDLKVFRHRGYSISMVTLSLAFGAFFSISVVTPLWLQIYMGYT 307
           +     ++WELT+ NP+VDL +F+ R ++I  + +SLA+  +F   V+ P  LQ   GYT
Sbjct: 243 VAICFLIVWELTDDNPIVDLSLFKSRNFTIGCLCISLAYMLYFGAIVLLPQLLQEVYGYT 302

Query: 308 ATISGHATASMGILAVFLAPIVANLSSKFDPRPFVFAGVMWLGLWTFMRGFN-TVDMTFS 366
           AT +G A+A +GI+ V L+PI+   + K D R  V    +   +  + R +     M F 
Sbjct: 303 ATWAGLASAPVGIIPVILSPIIGRFAHKLDMRRLVTFSFIMYAVCFYWRAYTFEPGMDFG 362

Query: 367 QISWPLFFQGIGMPLFFVPLTAIALGSVKPHEMESAAGLMNFIRTLSGAFATSMINTSWE 426
             +WP F QG  +  FF+PLT I L  + P  + +A+ L NF RTL+G+  TS+  T W 
Sbjct: 363 ASAWPQFIQGFAVACFFMPLTTITLSGLPPERLAAASSLSNFTRTLAGSIGTSITTTMWT 422

Query: 427 HETRYVHAELAGLTDKAGVATQAM--QNSGMSAEQTRSAMDWILQ---NQSVMVATNQLF 481
           +     HA+L    +      QAM  Q  G+   Q + A  WI Q   NQ ++++ N++F
Sbjct: 423 NRESMHHAQLTESVNPFNPNAQAMYSQLEGLGMTQ-QQASGWIAQQITNQGLIISANEIF 481

Query: 482 IVIALIFVFAACMIWFAPKP 501
            + A IF+    ++WFA  P
Sbjct: 482 WMSAGIFLVLLGLVWFAKPP 501