Pairwise Alignments

Query, 406 a.a., HlyD family secretion protein from Vibrio cholerae E7946 ATCC 55056

Subject, 402 a.a., efflux RND transporter periplasmic adaptor subunit from Rhodanobacter sp000427505 FW510-R12

 Score =  252 bits (644), Expect = 1e-71
 Identities = 142/344 (41%), Positives = 204/344 (59%), Gaps = 29/344 (8%)

Query: 37  LAAAIVVAGGSYALYWHFIGSRYISTDNAYAAAEIAEVTPAVGGIIAQVNVVDTEYVKQG 96
           L   +++A   ++L++   G  Y  TD+AY    + ++TP V G +  +   D + V  G
Sbjct: 35  LGGVMLLAAVGWSLWYFLDGRWYEGTDDAYVNGNVVQITPQVPGTVVSIGADDGDLVHAG 94

Query: 97  DVLVQLDDTDARLALLQAEADLALAKRRVRSYLANDEGLSAMVEAQEANEQRVKAQLKAA 156
           DVLV+LD +DA +AL  A+A+LA   R+VR   ++  G  A V A++             
Sbjct: 95  DVLVRLDPSDADVALAGAKANLAATVRKVRGLYSSMNGAQADVAARKTA----------- 143

Query: 157 QADFERAKIDLSRREDLVRSGSVSGEELTNAKTGFAQAQANLNAAKAAMAQAQATKLSTI 216
               ++A+ D  RR  L +SG++S EEL +A      A++NL  A+    Q Q +K+   
Sbjct: 144 ---VDKARADYQRRVALAKSGAISAEELAHASDALTSAESNLVTAQQ---QYQTSKV--- 194

Query: 217 GSQKANAALTDNTTVDSNPEVLLAKARYEQAKIDLERTVIRAPISGIVAKRQVQVGRRVQ 276
                   L D+T V S+P+V  A AR   A +D ER  + AP+ G VAKR VQVG+RVQ
Sbjct: 195 --------LVDDTVVASHPDVQAAAARLRAAFLDDERATLVAPVDGYVAKRSVQVGQRVQ 246

Query: 277 VGMPLMTVVPTDHIYVDANFKEVELRDVKVGQPVTLTADLYGDDVTYHGVVAGFSGGTGS 336
            G  LM VVP   ++VDANFKE +L D+++GQPVT+ +D+YG  V Y G V     GTGS
Sbjct: 247 PGAALMAVVPLHQVWVDANFKETQLTDMRIGQPVTIESDVYGGKVAYKGKVQSLGVGTGS 306

Query: 337 AFSMIPAQNATGNWIKVVQRLPIRIEL-DPKDLQAYPLQVGLSM 379
           AFS++PAQNATGNWIK+VQR+P+RI   DP  L  +PL++G+S+
Sbjct: 307 AFSLLPAQNATGNWIKIVQRIPVRIVFDDPAQLDRHPLRIGMSL 350