Pairwise Alignments

Query, 406 a.a., HlyD family secretion protein from Vibrio cholerae E7946 ATCC 55056

Subject, 416 a.a., Colistin resistance protein EmrA from Xanthobacter sp. DMC5

 Score =  239 bits (610), Expect = 1e-67
 Identities = 143/360 (39%), Positives = 212/360 (58%), Gaps = 20/360 (5%)

Query: 27  AQSRKKGFLGLAAAIV-VAGGSYALYWHFIGSRYISTDNAYAAAEIAEVTPAVGGIIAQV 85
           A+SRK    G   A++ VAGG Y L W  +G   +STD+AY AA+ + +   VGG +  V
Sbjct: 58  ARSRKPFIFGTVLAVLAVAGGWYGLNWWQVGRFQVSTDDAYVAADTSVIAAKVGGYVKSV 117

Query: 86  NVVDTEYVKQGDVLVQLDDTDARLALLQAEADLALAKRRVRSYLANDEGLSAMVEAQEAN 145
           +V   ++VK GDV+ ++DD D RLAL  AE  +A  +  +  +   +    A V+     
Sbjct: 118 DVDTNQWVKAGDVIARIDDGDYRLALQSAENKIATQEATLSRFDQQETAARATVD----- 172

Query: 146 EQRVKAQLKAAQADFERAKIDLSRREDLVRSGSVSGEELTNAKTGFAQAQANLNAAKAAM 205
             ++KAQL +A+AD  RA+ +  R++ L RS   S   L NA+    +  A++ AAKAA+
Sbjct: 173 --QMKAQLASAEADQRRAQAEFDRQDKLARSDFASRSTLDNARADKDKTAASVEAAKAAI 230

Query: 206 AQAQATKLSTIGSQKANAALTDNTTVDSNPEVLLAKARYEQAKIDLERTVIRAPISGIVA 265
           A A+A ++  + +Q+  A    +  +D        K   +QAK DL+ TV+RAPI G+V 
Sbjct: 231 ASAEA-QVVVLAAQRTEA----SHVLDE------LKTARDQAKRDLDFTVVRAPIDGVVG 279

Query: 266 KRQVQVGRRVQVGMPLMTVVPTDHIYVDANFKEVELRDVKVGQPVTLTADLYGDDVTYHG 325
            R  QVG+ VQ G  L+ VVP + +YVDANFKE +L  +K GQ V +  D Y D   + G
Sbjct: 280 NRAAQVGQLVQTGTRLVAVVPLESVYVDANFKETQLGRLKPGQSVNVYVDAYPDH-DFAG 338

Query: 326 VVAGFSGGTGSAFSMIPAQNATGNWIKVVQRLPIRIELDPKDLQAYPLQVGLSMVATIDT 385
            V   S  +GS FS++P +NATGN+ K+VQR+P+RI +DP  L  + L+ G+S+ AT+DT
Sbjct: 339 KVVSVSPASGSVFSLLPPENATGNFTKIVQRIPVRIAIDPNVLAKHELRPGMSVTATVDT 398