Pairwise Alignments

Query, 406 a.a., HlyD family secretion protein from Vibrio cholerae E7946 ATCC 55056

Subject, 440 a.a., Multidrug efflux system EmrAB-OMF, membrane fusion component EmrA from Variovorax sp. SCN45

 Score =  319 bits (817), Expect = 1e-91
 Identities = 172/385 (44%), Positives = 248/385 (64%), Gaps = 22/385 (5%)

Query: 30  RKKGFLGLAAAIVVAGGSYALYWHFIGSRYISTDNAYAAAEIAEVTPAVGGIIAQVNVVD 89
           R++    LAA ++VAGG + LY   + S Y  TDNAY +  + ++TP +GG +  +N  D
Sbjct: 27  RRRALTALAAVVIVAGGGWGLYEWLVASHYEDTDNAYVSGNVIQITPQIGGTVMSINADD 86

Query: 90  TEYVKQGDVLVQLDDTDARLALLQAEADLALAKRRVRSYLANDEGLSAMVEAQEANEQRV 149
           T++VK G  LVQLD  DA++AL QAEA LA A R+VR+  AN+  L+A V  ++++    
Sbjct: 87  TDFVKAGQPLVQLDPADAKVALEQAEAALAQAVRQVRTLYANNGSLAAQVTLRQSD---- 142

Query: 150 KAQLKAAQADFERAKIDLSRREDLVRSGSVSGEELTNAKTGFAQAQANLNAAKAAMAQAQ 209
              +  AQ+D  +A+ DL RR  L  +G+VS EEL +A+T    A++ L AA+A +  A+
Sbjct: 143 ---IVKAQSDIAKAQDDLQRRRALSGNGAVSKEELNHAETALDTAKSQLAAAQAGVIAAK 199

Query: 210 ATKLSTIGSQKANAALTDNTTVDSNPEVLLAKARYEQAKIDLERTVIRAPISGIVAKRQV 269
              +S       N +LT+ T+V  +P VL A A+  +A +  +R  + AP+ G VAKR V
Sbjct: 200 EALVS-------NQSLTEGTSVAQHPSVLAAAAKVREAYLATQRVAMPAPVDGYVAKRTV 252

Query: 270 QVGRRVQVGMPLMTVVPTDHIYVDANFKEVELRDVKVGQPVTLTADLYGDDVTYHGVVAG 329
           Q+G+RV  G P+M++VP + ++VDANFKEV+LR++++ QPV LTAD+YG  V Y G VAG
Sbjct: 253 QLGQRVAAGTPMMSIVPLNQLWVDANFKEVQLRNIRIDQPVKLTADVYGKKVEYTGKVAG 312

Query: 330 FSGGTGSAFSMIPAQNATGNWIKVVQRLPIRIELDPKDLQAYPLQVGLSMVATID----- 384
              GTGSAF+++PAQNATGNWIKVVQR+P+RI LDP+ L+A PL++GLSM A +D     
Sbjct: 313 LGVGTGSAFALLPAQNATGNWIKVVQRVPVRIALDPEQLKANPLRIGLSMDAEVDISSKS 372

Query: 385 ---TAGTTDPQTLVQYRAAKVSEQG 406
               A    P  LVQ +     ++G
Sbjct: 373 GKMLADAPRPAALVQTQVYSQLDRG 397