Pairwise Alignments

Query, 406 a.a., HlyD family secretion protein from Vibrio cholerae E7946 ATCC 55056

Subject, 378 a.a., Multidrug efflux system EmrAB-OMF, membrane fusion component EmrA from Sphingobium sp. HT1-2

 Score =  393 bits (1009), Expect = e-114
 Identities = 203/359 (56%), Positives = 263/359 (73%)

Query: 29  SRKKGFLGLAAAIVVAGGSYALYWHFIGSRYISTDNAYAAAEIAEVTPAVGGIIAQVNVV 88
           +RK     LA A++V G  +A ++  IG  ++STDNAY  AE+A+VTP +     +VNV 
Sbjct: 19  ARKTWLTRLAIAVLVVGVLWAAWYFLIGRNHVSTDNAYVNAEVAQVTPLLSAQAIEVNVT 78

Query: 89  DTEYVKQGDVLVQLDDTDARLALLQAEADLALAKRRVRSYLANDEGLSAMVEAQEANEQR 148
           DT+ VK+GDVLV+LD TDA++AL QAEADLA A+RR R   A    LSA VEA+ A+  +
Sbjct: 79  DTQTVKRGDVLVKLDPTDAQIALQQAEADLADARRRFRQTSATSGSLSAQVEARGADIVQ 138

Query: 149 VKAQLKAAQADFERAKIDLSRREDLVRSGSVSGEELTNAKTGFAQAQANLNAAKAAMAQA 208
            +AQL  AQADF++A+IDL RRE LV  G+VSG+E+T A+  +A A+A L+ A+A +  A
Sbjct: 139 ARAQLATAQADFDKARIDLQRREALVAGGAVSGDEVTAARKSYAAAKAALDLARAGVETA 198

Query: 209 QATKLSTIGSQKANAALTDNTTVDSNPEVLLAKARYEQAKIDLERTVIRAPISGIVAKRQ 268
           QAT+ +  G   AN AL   +T +S+P V++AKA+ E AK+DLERT+IRAPI G+V KR 
Sbjct: 199 QATRNAATGQLAANDALIRGSTEESDPAVMVAKAKLEDAKLDLERTIIRAPIDGVVTKRA 258

Query: 269 VQVGRRVQVGMPLMTVVPTDHIYVDANFKEVELRDVKVGQPVTLTADLYGDDVTYHGVVA 328
           VQ+G+RV  G P+M++VP   +YVDANFKE +LR VKVG P T+ AD+YG DV YHG V 
Sbjct: 259 VQIGQRVAQGSPIMSIVPLSQVYVDANFKERQLRHVKVGMPATVVADIYGGDVVYHGKVV 318

Query: 329 GFSGGTGSAFSMIPAQNATGNWIKVVQRLPIRIELDPKDLQAYPLQVGLSMVATIDTAG 387
           GFSGGTGS+ S+IPAQNATGNWIKVVQRLP+RI LDPK+L  +PL+VGLS    ID AG
Sbjct: 319 GFSGGTGSSLSLIPAQNATGNWIKVVQRLPVRIALDPKELAEHPLRVGLSTEVEIDLAG 377