Pairwise Alignments

Query, 406 a.a., HlyD family secretion protein from Vibrio cholerae E7946 ATCC 55056

Subject, 397 a.a., multidrug efflux transport system - membrane fusion protein from Pseudomonas putida KT2440

 Score =  285 bits (728), Expect = 2e-81
 Identities = 155/377 (41%), Positives = 231/377 (61%), Gaps = 29/377 (7%)

Query: 27  AQSRKKGFLGLAAAIVVAGGSYALYWHFIGSRYISTDNAYAAAEIAEVTPAVGGIIAQVN 86
           ++ RK   LGL   +++AG     ++  +G  + STD+AY    + E+TP V G +  + 
Sbjct: 17  SRKRKAWLLGLLLLLILAGVGTWAWYSIVGRWHESTDDAYVNGNVVEITPLVAGTVTSIG 76

Query: 87  VVDTEYVKQGDVLVQLDDTDARLALLQAEADLALAKRRVRSYLANDEGLSAMVEAQEANE 146
             D + V  G VL+Q D  D+ +AL  AEA LA + R+VR   +N + L           
Sbjct: 77  ADDGDLVHAGQVLLQFDPADSEVALQSAEAKLARSVRQVRGLYSNVDSL----------- 125

Query: 147 QRVKAQLKAAQADFERAKIDLSRREDLVRSGSVSGEELTNAKTGFAQAQANLNAAKAAMA 206
              KAQL+  QA+  +A+ D +RR+ L  SG+++ EEL++A+   + AQA +N+A+    
Sbjct: 126 ---KAQLETRQAELRKAQQDFNRRKVLADSGAIAAEELSHARDDLSVAQAAVNSARQ--- 179

Query: 207 QAQATKLSTIGSQKANAALTDNTTVDSNPEVLLAKARYEQAKIDLERTVIRAPISGIVAK 266
                +LST      ++AL D+T V S+P+V+ A A   QA +D  RT + AP++G VAK
Sbjct: 180 -----QLST------SSALVDDTVVSSHPDVMAAAADLRQAYLDHARTTLVAPVTGYVAK 228

Query: 267 RQVQVGRRVQVGMPLMTVVPTDHIYVDANFKEVELRDVKVGQPVTLTADLYGDDVTYHGV 326
           R VQ+G+R+Q G   M V+P D +++DANFKE +LR++++GQPV +TAD+YG +V Y G 
Sbjct: 229 RTVQLGQRLQPGTATMAVIPLDQVWIDANFKETQLREMRIGQPVEITADVYGSEVKYSGT 288

Query: 327 VAGFSGGTGSAFSMIPAQNATGNWIKVVQRLPIRIELDPKDLQAYPLQVGLSMVATIDTA 386
           V     GTGSAF+++PAQNATGNWIK+VQR+P+RI L P  L+ +PL++GLS V  +D  
Sbjct: 289 VDSLGAGTGSAFALLPAQNATGNWIKIVQRVPVRIHLSPDQLKDHPLRIGLSTVVEVDLH 348

Query: 387 GTTDPQTLVQYRAAKVS 403
             + P TL Q    K S
Sbjct: 349 DQSGP-TLAQQPPQKAS 364