Pairwise Alignments

Query, 406 a.a., HlyD family secretion protein from Vibrio cholerae E7946 ATCC 55056

Subject, 393 a.a., HlyD family efflux transporter periplasmic adaptor subunit from Pseudomonas sp. SVBP6

 Score =  263 bits (673), Expect = 5e-75
 Identities = 152/367 (41%), Positives = 213/367 (58%), Gaps = 30/367 (8%)

Query: 27  AQSRKKGFLGLAAAIVVAGGSYALYWHFI-GSRYISTDNAYAAAEIAEVTPAVGGIIAQV 85
           A+SR+     L   + +A    A  W+++ G  Y STDNAY   ++  ++  V G    V
Sbjct: 13  AKSRRGPIFLLITLVALAAAVAAALWYWVYGRLYESTDNAYVRGDVVLISAQVRGTATAV 72

Query: 86  NVVDTEYVKQGDVLVQLDDTDARLALLQAEADLALAKRRVRSYLANDEGLSAMVEAQEAN 145
           N+ +T+ VK GD LV++D  DARL+L  A   LAL  R V S  A +  L+A        
Sbjct: 73  NIQNTDTVKAGDTLVEIDPADARLSLDAATHQLALTVRTVNSLFAEENDLTA-------- 124

Query: 146 EQRVKAQLKAAQADFERAKIDLSRREDLVRSGSVSGEELTNAKTGFAQAQANLNAAKAAM 205
                 Q+K  QA+  RA  DL RR  ++  G VSGE+L +A+     AQ+ L AA+A +
Sbjct: 125 ------QVKLRQAEANRANQDLQRRRSVIAQGGVSGEDLHHAEEAAQIAQSGLRAAEAKL 178

Query: 206 AQAQATKLSTIGSQKANAALTDNTTVDSNPEVLLAKARYEQAKIDLERTVIRAPISGIVA 265
              QA                  TTV+++P+V  A  R  +A + L RT + AP+ G++ 
Sbjct: 179 VGLQAR--------------IQGTTVENHPQVAAAAERVREAYLALARTKVPAPVDGLIT 224

Query: 266 KRQVQVGRRVQVGMPLMTVVPTDHIYVDANFKEVELRDVKVGQPVTLTADLYGDDVTYHG 325
           KR VQVG+ ++ G  LM +VP D ++V+ANFKE +L  +KVGQ V L ADLYG+ V YHG
Sbjct: 225 KRAVQVGQHIEPGTVLMGLVPLDKVWVEANFKESQLGQIKVGQRVELFADLYGESVVYHG 284

Query: 326 VVAGFSGGTGSAFSMIPAQNATGNWIKVVQRLPIRIELDPKDLQAYPLQVGLSMVATIDT 385
            + G   G+G+AF+ IPAQNATGNWIKVVQR+P+RI LD +++  +PL++GLSM A   T
Sbjct: 285 RIQGIEAGSGAAFATIPAQNATGNWIKVVQRVPVRIALDREEVLRHPLRIGLSMTAKA-T 343

Query: 386 AGTTDPQ 392
            G  D Q
Sbjct: 344 LGEPDEQ 350