Pairwise Alignments

Query, 406 a.a., HlyD family secretion protein from Vibrio cholerae E7946 ATCC 55056

Subject, 387 a.a., EmrKY-TolC multidrug resistance efflux pump, membrane fusion protein component (NCBI) from Escherichia coli BW25113

 Score =  263 bits (672), Expect = 7e-75
 Identities = 151/378 (39%), Positives = 224/378 (59%), Gaps = 39/378 (10%)

Query: 9   LSSMNSNNSNTEFDGVRAAQSRKKGFLGLAAAIVVA-GGSYALYWHFIGSRYISTDNAYA 67
           +  +NSN  ++         +R+K F  LA  + +A  G+YA YW       ISTD+AY 
Sbjct: 1   MEQINSNKKHS---------NRRKYFSLLAVVLFIAFSGAYA-YWSMELEDMISTDDAYV 50

Query: 68  AAEIAEVTPAVGGIIAQVNVVDTEYVKQGDVLVQLDDTDARLALLQAEADLALAKRRVRS 127
                 ++  V G +  VN  DT YV+QGD+LV LD TDA +AL +A+ +LA   R+   
Sbjct: 51  TGNADPISAQVSGSVTVVNHKDTNYVRQGDILVSLDKTDATIALNKAKNNLANIVRQTNK 110

Query: 128 YLANDEGLSAMVEAQEANEQRVKAQLKAAQADFERAKIDLSRREDLVRSGSVSGEELTNA 187
               D+  SA              ++ +A+  ++++  D +RR  L + G +S E L + 
Sbjct: 111 LYLQDKQYSA--------------EVASARIQYQQSLEDYNRRVPLAKQGVISKETLEHT 156

Query: 188 KTGFAQAQANLNAAKAAMAQAQATKLSTIGSQKANAALTDNTTVDSNPEVLLAKARYEQA 247
           K     ++A LNAA              I + KAN AL  NT ++  P+V+ A    ++A
Sbjct: 157 KDTLISSKAALNAA--------------IQAYKANKALVMNTPLNRQPQVVEAADATKEA 202

Query: 248 KIDLERTVIRAPISGIVAKRQVQVGRRVQVGMPLMTVVPTDHIYVDANFKEVELRDVKVG 307
            + L+RT I++P++G +A+R VQVG  V  G  LM VVP   ++V+ANFKE +L DV++G
Sbjct: 203 WLALKRTDIKSPVTGYIAQRSVQVGETVSPGQSLMAVVPARQMWVNANFKETQLTDVRIG 262

Query: 308 QPVTLTADLYGDDVTYHGVVAGFSGGTGSAFSMIPAQNATGNWIKVVQRLPIRIELDPKD 367
           Q V + +DLYG++V +HG V G + GTG+AFS++PAQNATGNWIK+VQR+P+ + LDPK+
Sbjct: 263 QSVNIISDLYGENVVFHGRVTGINMGTGNAFSLLPAQNATGNWIKIVQRVPVEVSLDPKE 322

Query: 368 LQAYPLQVGLSMVATIDT 385
           L  +PL++GLSM ATIDT
Sbjct: 323 LMEHPLRIGLSMTATIDT 340