Pairwise Alignments

Query, 406 a.a., HlyD family secretion protein from Vibrio cholerae E7946 ATCC 55056

Subject, 390 a.a., multidrug efflux MFS transporter periplasmic adaptor subunit EmrA from Erwinia amylovora T8

 Score =  256 bits (653), Expect = 1e-72
 Identities = 145/358 (40%), Positives = 212/358 (59%), Gaps = 28/358 (7%)

Query: 28  QSRKKGFLGLAAAIVVAGGSYALYWHFIGSRYISTDNAYAAAEIAEVTPAVGGIIAQVNV 87
           ++R +  + L   +V  G +Y  +W  I S Y  TD+AY A   A+V   V G + +V  
Sbjct: 18  KTRTRALIFLTVLLVTIGIAYLAWWLLILSHYQETDDAYVAGNQAQVMAQVTGSVNKVWF 77

Query: 88  VDTEYVKQGDVLVQLDDTDARLALLQAEADLALAKRRVRSYLANDEGLSAMVEAQEANEQ 147
            +T+ VKQGDVLV LD TDA  A  +A+  LA + R+    + N +   A +E Q     
Sbjct: 78  DNTDLVKQGDVLVTLDRTDADQAFEKAQTALATSVRQTHQLIINGKQYQATIELQ----- 132

Query: 148 RVKAQLKAAQADFERAKIDLSRREDLVRSGSVSGEELTNAKTGFAQAQANLNAAKAAMAQ 207
             K  L+ AQAD       L RRE L  +  +  E+L +A+   A A+A L+ A      
Sbjct: 133 --KTALEQAQAD-------LRRREPLGAAKLLGKEDLQHARDAVATAKARLDVA------ 177

Query: 208 AQATKLSTIGSQKANAALTDNTTVDSNPEVLLAKARYEQAKIDLERTVIRAPISGIVAKR 267
                   +    AN A+  NT++++ P V  + A+   A + L+RT + +PI G V++R
Sbjct: 178 --------MQQYNANQAMILNTSLENQPAVKQSAAQLRDAWLTLQRTTVVSPIDGYVSRR 229

Query: 268 QVQVGRRVQVGMPLMTVVPTDHIYVDANFKEVELRDVKVGQPVTLTADLYGDDVTYHGVV 327
            VQVG ++    PL+ +VP ++++VDANFKE +L  +++GQP T+ +D+YGDDV YHG V
Sbjct: 230 SVQVGSQISSTTPLLAIVPANNLWVDANFKETQLAGMRIGQPATVVSDIYGDDVVYHGKV 289

Query: 328 AGFSGGTGSAFSMIPAQNATGNWIKVVQRLPIRIELDPKDLQAYPLQVGLSMVATIDT 385
            G   GTGSAFS++PAQNATGNWIKVVQRLP+RI LD +++  +PL++GLS +  IDT
Sbjct: 290 VGLDMGTGSAFSLLPAQNATGNWIKVVQRLPVRIALDAQEVAKHPLRIGLSTLVKIDT 347