Pairwise Alignments

Query, 406 a.a., HlyD family secretion protein from Vibrio cholerae E7946 ATCC 55056

Subject, 364 a.a., Multidrug resistance efflux pump from Enterobacter asburiae PDN3

 Score =  172 bits (436), Expect = 1e-47
 Identities = 116/349 (33%), Positives = 183/349 (52%), Gaps = 17/349 (4%)

Query: 35  LGLAAAIVVAGGSYALYWHFIGSRYISTDNAYAAAEIAEVTPAVGGIIAQVNVVDTEYVK 94
           LG+   ++V     AL W F+     +TD+A+   ++  + P   G + ++ V D + VK
Sbjct: 30  LGIVVVVMVV---VALVWWFLTRNEETTDDAFTDGDVVTIAPKTAGYVTELRVRDNQRVK 86

Query: 95  QGDVLVQLDDTDARLALLQAEADLALAKRRVRSYLANDEGLSAMVEAQEANEQRVKAQLK 154
           +GD+LV +D  D      QA+A L LA  ++    A    L+       A     KAQ+ 
Sbjct: 87  KGDLLVVIDPRDTAAQRDQAQAQLGLAIAQLHQAQAQ---LALSKVQYPAQRDEAKAQVL 143

Query: 155 AAQADFERAKIDLSRREDLVRSGSVSGEELTNAKTGFAQAQANLNAAKAAMAQAQATKLS 214
            AQAD   A+ +  RR+  V   + + + + +A      AQA L +A+A +  A+  +L 
Sbjct: 144 KAQADLANAQAEY-RRQRGVDPRATTQQSIDSANAQLRSAQAGLASAQAQLEVAEQVQLQ 202

Query: 215 TIGSQKANAALTDNTTVDSNPEVLLAKARYEQAKIDLERTVIRAPISGIVAKRQVQVGRR 274
            I  Q+ N    +        +V  AKA+ E A ++L  T +RAP  G+V KR VQ G  
Sbjct: 203 -IRQQETNVEARER-------QVDQAKAQLETANLNLSYTEVRAPFDGVVTKRNVQPGTL 254

Query: 275 VQVGMPLMTVVPTDHIYVDANFKEVELRDVKVGQPVTLTADLYGDDVTYHGVVAGFSGGT 334
           VQ G  L ++V + +++V ANFKE +L  +K G  VT++ D +  D+   G V     G+
Sbjct: 255 VQAGTALFSLV-SPNVWVVANFKESQLERMKPGDKVTVSVDAW-PDMELEGHVDSIQQGS 312

Query: 335 GSAFSMIPAQNATGNWIKVVQRLPIRIELDPKDLQAYPLQVGLSMVATI 383
           GS FS  PA+NATGN++K+VQR+P++I +D       PL +GLS+   +
Sbjct: 313 GSRFSAFPAENATGNFVKIVQRVPVKIVIDKGLDPNKPLPLGLSVAPKV 361