Pairwise Alignments

Query, 406 a.a., HlyD family secretion protein from Vibrio cholerae E7946 ATCC 55056

Subject, 360 a.a., Multidrug resistance efflux pump from Enterobacter asburiae PDN3

 Score =  177 bits (449), Expect = 4e-49
 Identities = 127/351 (36%), Positives = 184/351 (52%), Gaps = 23/351 (6%)

Query: 38  AAAIVVAGGSYALY-WHFIG-SRYIS-TDNAYAAAEIAEVTPAVGGIIAQVNVVDTEYVK 94
           AAAI + G    LY W     +R+   TDNAY   +   ++P V G I +V V D   VK
Sbjct: 25  AAAIGIVGVLVILYAWQLPPFTRHAQFTDNAYVRGQTTFISPQVNGYITEVKVQDFVQVK 84

Query: 95  QGDVLVQLDDTDARLALLQAEADLALAKRRVRSYLANDEGLSAMVEAQEANEQRVKAQLK 154
           +GD+L+Q+DD   R  + QAEA LA+    + + L   +   A +   +A  +  +AQ  
Sbjct: 85  KGDLLLQIDDRIYRQRVHQAEAQLAMKIAALNNNLQQRKSAEATIAKNDAALKNARAQSL 144

Query: 155 AAQADFERAKIDLSRREDLVRSGSVSGEELTNAKTGFAQAQANLNAAKAAMAQAQATKLS 214
             QAD +R K       DL   GS+S  E   A    AQ  A++  AKA++  ++    +
Sbjct: 145 KTQADLKRVK-------DLTADGSLSIRERDAALASAAQGSADIEQAKASLEMSRQDLQT 197

Query: 215 TIGSQKANAALTDNTTVDSNPEVLLAKARYEQAKIDLERTVIRAPISGIVAKRQVQVGRR 274
            I ++ A  A  +N           AKA  E A+IDL+ T I AP  G + +  V++G  
Sbjct: 198 VIVNRGALEADVEN-----------AKAALELAQIDLQNTRITAPRDGQLGQIAVRLGAY 246

Query: 275 VQVGMPLMTVVPTDHIYVDANFKEVELRDVKVGQPVTLTADLYGDDVTYHGVVAGFSGGT 334
           V  G  L T+VP  H +V AN KE +L +++VGQPV  T D   ++  Y G V   S  T
Sbjct: 247 VTAGTHLTTLVPPQH-WVIANIKETQLAELRVGQPVKFTVDAL-NNKAYQGRVESISPAT 304

Query: 335 GSAFSMIPAQNATGNWIKVVQRLPIRIELDPKDLQAYPLQVGLSMVATIDT 385
           G  FS I   NATGN++K+ QR+P+RIE+  K  ++  L+ G+S+  TIDT
Sbjct: 305 GVEFSAITPDNATGNFVKIAQRIPVRIEVLGKPEESALLRPGMSVQVTIDT 355