Pairwise Alignments

Query, 406 a.a., HlyD family secretion protein from Vibrio cholerae E7946 ATCC 55056

Subject, 387 a.a., multidrug efflux MFS transporter periplasmic adaptor subunit EmrK from Escherichia coli ECRC62

 Score =  258 bits (660), Expect = 2e-73
 Identities = 147/358 (41%), Positives = 216/358 (60%), Gaps = 30/358 (8%)

Query: 29  SRKKGFLGLAAAIVVA-GGSYALYWHFIGSRYISTDNAYAAAEIAEVTPAVGGIIAQVNV 87
           +R+K F  LA  + +A  G+YA YW       ISTD+AY       ++  V G +  VN 
Sbjct: 12  NRRKYFSLLAVVLFIAFSGAYA-YWSMELEDMISTDDAYVTGNADPISAQVSGSVTVVNH 70

Query: 88  VDTEYVKQGDVLVQLDDTDARLALLQAEADLALAKRRVRSYLANDEGLSAMVEAQEANEQ 147
            DT YV+QGD+LV LD TDA +AL +A+ +LA   R+       D+  SA          
Sbjct: 71  KDTNYVRQGDILVSLDKTDATIALNKAKNNLANIVRQTNKLYLQDKQYSA---------- 120

Query: 148 RVKAQLKAAQADFERAKIDLSRREDLVRSGSVSGEELTNAKTGFAQAQANLNAAKAAMAQ 207
               ++ +A+  ++++  D +RR  L + G +S E L + K     ++A LNAA      
Sbjct: 121 ----EVASARIQYQQSLEDYNRRVPLAKQGVISKETLEHTKDTLISSKAALNAA------ 170

Query: 208 AQATKLSTIGSQKANAALTDNTTVDSNPEVLLAKARYEQAKIDLERTVIRAPISGIVAKR 267
                   I + KAN AL  NT ++  P+V+ A    ++A + L+RT I++P++G +A+R
Sbjct: 171 --------IQAYKANKALIMNTPLNRQPQVVEAADATKEAWLALKRTDIKSPVTGYIAQR 222

Query: 268 QVQVGRRVQVGMPLMTVVPTDHIYVDANFKEVELRDVKVGQPVTLTADLYGDDVTYHGVV 327
            VQVG  V  G  LM VVP   ++V+ANFKE +L DV++GQ V + +DLYG++V +HG V
Sbjct: 223 SVQVGETVSPGQSLMAVVPARQMWVNANFKETQLTDVRIGQSVNIISDLYGENVVFHGRV 282

Query: 328 AGFSGGTGSAFSMIPAQNATGNWIKVVQRLPIRIELDPKDLQAYPLQVGLSMVATIDT 385
            G + GTG+AFS++PAQNATGNWIK+VQR+P+ + LD K+L  +PL++GLSM ATIDT
Sbjct: 283 TGINMGTGNAFSLLPAQNATGNWIKIVQRVPVEVSLDLKELMEHPLRIGLSMTATIDT 340