Pairwise Alignments

Query, 406 a.a., HlyD family secretion protein from Vibrio cholerae E7946 ATCC 55056

Subject, 390 a.a., multidrug efflux MFS transporter periplasmic adaptor subunit EmrA from Escherichia coli ECRC62

 Score =  255 bits (652), Expect = 1e-72
 Identities = 147/375 (39%), Positives = 215/375 (57%), Gaps = 29/375 (7%)

Query: 12  MNSN-NSNTEFDGVRAAQSRKKGFLGLAAAIVVAGGSYALYWHFIGSRYISTDNAYAAAE 70
           M++N  + T    V+ +  RK+  L L    ++   +  +YW  +   +  TD+AY A  
Sbjct: 1   MSANAETQTPQQPVKKSGKRKRLLLLLTLLFIIIAVAIGIYWFLVLRHFEETDDAYVAGN 60

Query: 71  IAEVTPAVGGIIAQVNVVDTEYVKQGDVLVQLDDTDARLALLQAEADLALAKRRVRSYLA 130
             ++   V G + +V   +T++VK+GDVLV LD TDAR A  +A+  LA + R+    + 
Sbjct: 61  QIQIMSQVSGSVTKVWADNTDFVKEGDVLVTLDPTDARQAFEKAKTALASSVRQTHQLMI 120

Query: 131 NDEGLSAMVEAQEANEQRVKAQLKAAQADFERAKIDLSRREDLVRSGSVSGEELTNAKTG 190
           N + L A +E Q       K  L  AQ+D+       +RR  L  +  +  EEL +A+  
Sbjct: 121 NSKQLQANIEVQ-------KIALAKAQSDY-------NRRVPLGNANLIGREELQHARDA 166

Query: 191 FAQAQANLNAAKAAMAQAQATKLSTIGSQKANAALTDNTTVDSNPEVLLAKARYEQAKID 250
              AQA L+ A              I    AN A+   T ++  P V  A      A + 
Sbjct: 167 VTSAQAQLDVA--------------IQQYNANQAMILGTKLEDQPAVQQAATEVRNAWLA 212

Query: 251 LERTVIRAPISGIVAKRQVQVGRRVQVGMPLMTVVPTDHIYVDANFKEVELRDVKVGQPV 310
           LERT I +P++G V++R VQ G ++    PLM VVP  +++VDANFKE ++ ++++GQPV
Sbjct: 213 LERTRIVSPMTGYVSRRAVQPGAQISPTTPLMAVVPATNMWVDANFKETQIANMRIGQPV 272

Query: 311 TLTADLYGDDVTYHGVVAGFSGGTGSAFSMIPAQNATGNWIKVVQRLPIRIELDPKDLQA 370
           T+T D+YGDDV Y G V G   GTGSAFS++PAQNATGNWIKVVQRLP+RIELD K L+ 
Sbjct: 273 TITTDIYGDDVKYTGKVVGLDMGTGSAFSLLPAQNATGNWIKVVQRLPVRIELDQKQLEQ 332

Query: 371 YPLQVGLSMVATIDT 385
           YPL++GLS + +++T
Sbjct: 333 YPLRIGLSTLVSVNT 347