Pairwise Alignments

Query, 406 a.a., HlyD family secretion protein from Vibrio cholerae E7946 ATCC 55056

Subject, 391 a.a., multidrug efflux MFS transporter periplasmic adaptor subunit EmrA from Dickeya dianthicola ME23

 Score =  257 bits (657), Expect = 4e-73
 Identities = 150/361 (41%), Positives = 209/361 (57%), Gaps = 29/361 (8%)

Query: 27  AQSRKKGFLGLAAAIVV-AGGSYALYWHFIGSRYISTDNAYAAAEIAEVTPAVGGIIAQV 85
           ++  +KG L L   +    G  +  YW+ +   +  TD+AY A    ++   V G +A+V
Sbjct: 17  SKKSRKGILTLLMILFFFIGCVWFAYWYLVLRHHQETDDAYVAGNQIQIMSQVNGSVARV 76

Query: 86  NVVDTEYVKQGDVLVQLDDTDARLALLQAEADLALAKRRVRSYLANDEGLSAMVEAQEAN 145
           NV +T+ VK+GDVLV+LD TDA  A  +A+  LA + R+V   +       A ++ Q   
Sbjct: 77  NVDNTDLVKKGDVLVELDPTDAEQAFERAKTTLANSVRQVHQQMITVRQYQANIDLQ--- 133

Query: 146 EQRVKAQLKAAQADFERAKIDLSRREDLVRSGSVSGEELTNAKTGFAQAQANLNAAKAAM 205
                      Q   + A  DL RRE L R+ ++  E+L +A+   A A+A+L AAK   
Sbjct: 134 -----------QIALDTAISDLIRREALGRANAIGREDLQHARDQVASARASLEAAKQQY 182

Query: 206 AQAQATKLSTIGSQKANAALTDNTTVDSNPEVLLAKARYEQAKIDLERTVIRAPISGIVA 265
           A  QA  L              NT ++  P +  A      A + L+RT I +P+ G V+
Sbjct: 183 AATQALVL--------------NTPLEQQPAIAQAATDLRNAWLALKRTHIVSPVDGYVS 228

Query: 266 KRQVQVGRRVQVGMPLMTVVPTDHIYVDANFKEVELRDVKVGQPVTLTADLYGDDVTYHG 325
           +R VQ+G RV     LM VVPT  ++VDANFKE +L ++++GQP T+ +DLYGD V Y G
Sbjct: 229 RRSVQLGARVTPSSALMAVVPTAPLWVDANFKETQLPNMRIGQPATIISDLYGDIVEYKG 288

Query: 326 VVAGFSGGTGSAFSMIPAQNATGNWIKVVQRLPIRIELDPKDLQAYPLQVGLSMVATIDT 385
            V G   GTGSAFS++PAQNATGNWIKVVQRLP+RIELDPK L  YPL++GLSM+  +DT
Sbjct: 289 KVVGLDMGTGSAFSLLPAQNATGNWIKVVQRLPVRIELDPKQLADYPLRIGLSMLVNVDT 348

Query: 386 A 386
           A
Sbjct: 349 A 349