Pairwise Alignments

Query, 406 a.a., HlyD family secretion protein from Vibrio cholerae E7946 ATCC 55056

Subject, 380 a.a., HlyD family efflux transporter periplasmic adaptor subunit from Dickeya dianthicola 67-19

 Score =  261 bits (666), Expect = 3e-74
 Identities = 149/366 (40%), Positives = 219/366 (59%), Gaps = 32/366 (8%)

Query: 22  DGVRAAQSRKKGFLGLAAAIVVAGGSYALYWHFIGSRYISTDNAYAAAEIAEVTPAVGGI 81
           D     +S KK  L +  A +    S    W ++G+   +T++AY    + +VT  VGG 
Sbjct: 3   DDKSTKKSGKKTALFIFPAAITICLSIYFLWTYVGNNTATTEDAYVEGNLVQVTSQVGGT 62

Query: 82  IAQVNVVDTEYVKQGDVLVQLDDTDARLALLQAEADLALAKRRVRSYLANDEGLSAMVEA 141
           I  +   +T+YVK+GDV+V ++  D ++ L +A+A LA   R VR+  AN + L+A +E 
Sbjct: 63  IIDIKADNTDYVKRGDVVVVINPIDTKVQLDKAKAQLASTVRAVRNQFANLQQLAAAIEM 122

Query: 142 QEANEQRVKAQLKAAQADFERAKIDLSRREDLVRSGSVSGEELTNAKTGFAQAQANLNAA 201
           ++               D+ +A  D  RR  L +S ++S E++ +A          +N A
Sbjct: 123 KKT--------------DYNKATADYRRRSGLSKSMAISVEDMNHASDA-------VNLA 161

Query: 202 KAAMAQAQATKLSTIGSQKANAAL--TDNTTVDSNPEVLLAKARYEQAKIDLERTVIRAP 259
           KAA+  A++         + NAAL  T NTT DS+P+VL A+A + QA +D  RT +  P
Sbjct: 162 KAAVKVAES---------QYNAALVYTSNTTPDSHPDVLTAEAVFRQAWLDWHRTNVIVP 212

Query: 260 ISGIVAKRQVQVGRRVQVGMPLMTVVPTDHIYVDANFKEVELRDVKVGQPVTLTADLYGD 319
           +SG++A+R +QVG+ +  G  LM++VP D I+V ANFKE +L ++KVGQ  TLT+D++G 
Sbjct: 213 VSGVIAQRSIQVGQHISSGSTLMSIVPLDSIWVTANFKETQLGNIKVGQNATLTSDVHGR 272

Query: 320 DVTYHGVVAGFSGGTGSAFSMIPAQNATGNWIKVVQRLPIRIELDPKDLQAYPLQVGLSM 379
            V Y G + G   GTGSAFS++PAQNATGNWIKVVQR+P+RIELD   L  YPL+ GLSM
Sbjct: 273 GVQYKGKILGIEPGTGSAFSLLPAQNATGNWIKVVQRIPVRIELDKNLLSQYPLRPGLSM 332

Query: 380 VATIDT 385
              +DT
Sbjct: 333 KVKVDT 338