Pairwise Alignments

Query, 406 a.a., HlyD family secretion protein from Vibrio cholerae E7946 ATCC 55056

Subject, 392 a.a., efflux RND transporter periplasmic adaptor subunit from Dickeya dadantii 3937

 Score =  278 bits (710), Expect = 3e-79
 Identities = 153/359 (42%), Positives = 219/359 (61%), Gaps = 28/359 (7%)

Query: 30  RKKGFLGLAAAIVVAGGSYALYWHFIGSRYISTDNAYAAAEIAEVTPAVGGIIAQVNVVD 89
           RK+ F  L   +++     A Y+      Y +TDNAY    +  +TP VGG + QV+V D
Sbjct: 15  RKRQFAILLLVLLLGAAGSAAYYQLYLRFYETTDNAYVGGNLITLTPQVGGTVTQVSVDD 74

Query: 90  TEYVKQGDVLVQLDDTDARLALLQAEADLALAKRRVRSYLANDEGLSAMVEAQEANEQRV 149
            +YV++G +LVQL  +D  +AL Q+EA LA   R+VR       GL + V+         
Sbjct: 75  GDYVEKGQLLVQLSPSDTLIALQQSEAQLASVVRQVR-------GLYSTVD-------NY 120

Query: 150 KAQLKAAQADFERAKIDLSRREDLVRSGSVSGEELTNAKTGFAQAQANLNAAKAAMAQAQ 209
           +AQ+ + Q   ++A  D +RR+ L+  G++S E+L + +     A++ L+AA+ A+    
Sbjct: 121 QAQVASRQVALQQAVGDYNRRKGLMAKGAISAEDLAHYQDAVNSARSALDAAEQAL---- 176

Query: 210 ATKLSTIGSQKANAALTDNTTVDSNPEVLLAKARYEQAKIDLERTVIRAPISGIVAKRQV 269
                     + N A+ DNT +D +PE+  A A      +D  R+ I AP+SG VAKR V
Sbjct: 177 ----------RTNQAMVDNTVLDDHPEIKNAVADLRSKYLDWARSAIVAPVSGYVAKRAV 226

Query: 270 QVGRRVQVGMPLMTVVPTDHIYVDANFKEVELRDVKVGQPVTLTADLYGDDVTYHGVVAG 329
           QVG RV  G  LMT+VP D ++VDANFKE ++  +++GQPVTLTADLYGD   YHG +  
Sbjct: 227 QVGMRVSTGATLMTIVPLDQVWVDANFKESQMLHMRLGQPVTLTADLYGDKTVYHGTIQS 286

Query: 330 FSGGTGSAFSMIPAQNATGNWIKVVQRLPIRIELDPKDLQAYPLQVGLSMVATIDTAGT 388
              GTGSAFS++PAQNA+GNWIK+VQRLP+RI LDP+ L+  PL++GLSM A++D   T
Sbjct: 287 LGIGTGSAFSLLPAQNASGNWIKIVQRLPVRIALDPEGLKQRPLRIGLSMQASVDLHNT 345