Pairwise Alignments

Query, 406 a.a., HlyD family secretion protein from Vibrio cholerae E7946 ATCC 55056

Subject, 432 a.a., multidrug resistance efflux pump from Agrobacterium fabrum C58

 Score =  203 bits (517), Expect = 7e-57
 Identities = 139/391 (35%), Positives = 207/391 (52%), Gaps = 30/391 (7%)

Query: 19  TEFDGVRAAQSRKKGFLG--LAAAIVVAGGSYALYWHFIGSRYISTDNAYAAAEIAEVTP 76
           T    V A +++K+  L    A A++V  G Y   W   G   +STD+AY   +IA + P
Sbjct: 66  TPAPAVAAPKAKKRSPLLPIFALALLVGAGWYGYNWWIDGRFMVSTDDAYIQGDIAVIAP 125

Query: 77  AVGGIIAQVNVVDTEYVKQGDVLVQLDDTDARLALLQAEADLALAKRRVRSYLANDEGLS 136
            V G +A+VNVV+ + VK GD LV LDD D R+A  QA+A       ++R+   + + + 
Sbjct: 126 KVAGYVAKVNVVENQEVKAGDPLVTLDDGDYRIAFEQADA-------QIRTEQLSLKRID 178

Query: 137 AMVEAQEANEQRVKAQLKAAQADFERAKIDLSRREDLVRS--GSVSGEELTNAKTGFAQA 194
           A +   EA +++  AQ  A  A    A+I   R  +L     G+V+  +  NA+    QA
Sbjct: 179 AQIIGGEAAQEQAVAQKGALDAALRGAEITQKRATELQAKDVGTVAASD--NAQVALDQA 236

Query: 195 QANLNAAKAAMAQAQATKLSTIGSQKANAALTDNTTVDSNPEVLLAKARYEQAKIDLERT 254
           +AN+ A +AA           I S KAN  L      ++   +   +   ++A  DL  T
Sbjct: 237 RANVVAGEAA-----------ISSAKANVELLRAQREEAESTIRSLQLSKDKAARDLAFT 285

Query: 255 VIRAPISGIVAKRQVQVGRRVQVGMPLMTVVPTDHIYVDANFKEVELRDVKVGQPVTLTA 314
           V++AP  G++    VQ G  V VG  L ++VP + +Y+DANFKE +L  V  G  V +  
Sbjct: 286 VLKAPYDGVIGNLAVQTGDLVSVGKRLASLVPMNELYIDANFKETQLARVVPGSKVRVHV 345

Query: 315 DLYGDDVTYHGVVAGFSGGTGSAFSMIPAQNATGNWIKVVQRLPIRIELDPKDLQAYPLQ 374
           D + DD    G V   S G+GS FSM+P +NATGN+ KV+QR+P+RI    +DL  + L+
Sbjct: 346 DAF-DDEAIEGTVQSISPGSGSVFSMLPPENATGNFTKVIQRVPVRIVFSKEDLAKHNLR 404

Query: 375 VGLSMVATIDTAGTTDPQTLVQYRAAKVSEQ 405
            GLS+V  +DT   T P+     R A+V+ Q
Sbjct: 405 AGLSVVVDVDT--RTAPENT---RTAQVNPQ 430