Pairwise Alignments

Query, 406 a.a., HlyD family secretion protein from Vibrio cholerae E7946 ATCC 55056

Subject, 355 a.a., secretion protein from Agrobacterium fabrum C58

 Score =  164 bits (416), Expect = 3e-45
 Identities = 117/352 (33%), Positives = 185/352 (52%), Gaps = 25/352 (7%)

Query: 43  VAGGSYALY-WHF--IGSRYISTDNAYAAAEIAEVTPAVGGIIAQVNVVDTEYVKQGDVL 99
           +AG +  LY W      S    TDNA+    +  ++P V G +  V V D + VKQG +L
Sbjct: 18  IAGVALVLYAWRLPPFLSTVEMTDNAFVRGYVTTMSPQVSGYVVNVPVKDYQEVKQGTLL 77

Query: 100 VQLDDTDARLALLQAEADLALAKRRVRSYLANDEGLSAMVEAQEANEQRVKAQLKAAQAD 159
            ++DD        QAEA L   K  + +    +   +A + + E       A + +A+A 
Sbjct: 78  AKIDDRIYHQKQAQAEATLDTHKAALDNSRQQENAANANIRSSE-------AAVDSAEAS 130

Query: 160 FERAKIDLSRREDLVRSGSVSGEELTNAKTGFAQAQANLNAAKAAMAQAQATKLSTIGSQ 219
            ++A++   R+++L++SG  +      A     +A+A+L+ AKAA+  ++    + I ++
Sbjct: 131 LKQAQLASDRQDNLIKSGVGTSSLQEEAHAALEKARASLSQAKAALEVSRQDLQTIIVNR 190

Query: 220 KANAALTDNTTVDSNPEVLLAKARYEQAKIDLERTVIRAPISGIVAKRQVQVGRRVQVGM 279
            +  A   N           A+A  E A+IDL  T IRAP+ G + +  V+ G+ V  G 
Sbjct: 191 SSLQAAVAN-----------AEAAVELARIDLANTEIRAPVDGRLGEVGVRTGQYVTAGT 239

Query: 280 PLMTVVPTDHIYVDANFKEVELRDVKVGQPVTLTAD-LYGDDVTYHGVVAGFSGGTGSAF 338
            LM VVP D ++V ANFKE +L  ++VGQPVT++ D L+   +T H  V  FS  TGS F
Sbjct: 240 QLMAVVPHD-VWVIANFKETQLAGMQVGQPVTISVDALHRRKLTGH--VERFSPATGSEF 296

Query: 339 SMIPAQNATGNWIKVVQRLPIRIELDPKDLQAYPLQVGLSMVATIDTAGTTD 390
           ++I   NATGN++K+ QRL +RI +D     A  L  G+S+V  +D +   D
Sbjct: 297 AVIKPDNATGNFVKIAQRLGVRIVIDADQPLAAELSPGMSVVVHLDKSKAPD 348