Pairwise Alignments

Query, 484 a.a., multidrug resistance protein from Vibrio cholerae E7946 ATCC 55056

Subject, 503 a.a., RND transporter from Pseudomonas simiae WCS417

 Score =  243 bits (620), Expect = 1e-68
 Identities = 153/459 (33%), Positives = 230/459 (50%), Gaps = 5/459 (1%)

Query: 25  AFVLTGCSVPDHYPDLATMWEANELSSTNTFSHQAE-MDWPSANWWQRYQDAQLNHLIEE 83
           +  ++GC              AN L++ +   + A+   WP+  WWQ Y D QLN  ++ 
Sbjct: 18  SLAISGCIGTGGIAPQGQSLNANTLATDDAIQNAAQDAHWPTGQWWQAYGDPQLNRWVDL 77

Query: 84  ALQHSPSLEMAMARLKGAQGFARQAGAIRSFDLGLAASATESK-VSERYQSATPPDGWND 142
           A QHSPS+ MA AR++ A+  A  A +  S  +    +        +++       G N 
Sbjct: 78  ATQHSPSMAMAAARVREARAMAGVAESAESLQINSDTTLKRHNWPKDQFYGPGELSGANT 137

Query: 143 Y-GTLTLNFQYDFDFWGKNRAAVVAATSELAAAEAESVAARLMISTSIANAYAELARLYA 201
           +    +L   Y  D WG+   A   A      + AE+  A+L +  ++  AY +L+  YA
Sbjct: 138 WDNNASLGLSYALDLWGRESNATERAVDLAHMSAAEARQAQLELQNNVVRAYIQLSLHYA 197

Query: 202 NQETVHAALQVRNKTVELLEKRYANGLETLGSVSQAKAVAASVEAELLGIQESIQLQKNA 261
           N++ V A L  + + ++L   R   G+ T   VSQA+        +L  + E I L +N 
Sbjct: 198 NRDIVAATLAQQQQILDLANTRLNAGIGTHFDVSQAETPLPETHRQLDALDEEIALSRNQ 257

Query: 262 LAALVGQGPDRAASIEEPHITLTSRYGLPSEAGVGLLGHRADITAARWRAEAAAQQVGIA 321
           LAAL G+GP   A ++ P ++L +   LPS     LLG R D+ A RW+  A A+ + +A
Sbjct: 258 LAALAGKGPGEGAQLQRPSLSLAAPLKLPSSLPAQLLGQRPDVVARRWQVAAQARGIDVA 317

Query: 322 QAQFYPDVTLSAFIGYQAFGLDHL-FDSGNDAG-AIGPAIYLPLFTGGRLEGQLTSAEAR 379
            A FYP+V L   +GY A G   L F +G      +GPAI LP+F GGRL  +L  A A 
Sbjct: 318 HAGFYPNVDLVGSLGYMATGGGMLEFLAGKKFNYNVGPAITLPIFDGGRLRAELGEASAG 377

Query: 380 YQEAVAQYNGTLVQALYEVADVVTSSQALQARINKTEQAVQQAEQALHIATNRYQGGLAT 439
           Y  AVAQYN TLV AL  ++D +   +++  +     Q+V  A++   IA   YQ GL  
Sbjct: 378 YDIAVAQYNQTLVNALKGISDQLIRRESMDKQAAFAAQSVASAQKTYDIAMIAYQRGLTD 437

Query: 440 YLDVLVAEESLLNNQRALVNLQSRAFSLDLALIHALGGG 478
           YL+VL A+  L + Q+    +Q+   S    L+ ALGGG
Sbjct: 438 YLNVLNAQTLLFHQQQIEQQVQAARLSAHAELVTALGGG 476