Pairwise Alignments

Query, 484 a.a., multidrug resistance protein from Vibrio cholerae E7946 ATCC 55056

Subject, 467 a.a., RND transporter from Pseudomonas simiae WCS417

 Score =  162 bits (411), Expect = 2e-44
 Identities = 126/423 (29%), Positives = 199/423 (47%), Gaps = 17/423 (4%)

Query: 68  WWQRYQDAQLNHLIEEALQHSPSLEMAMARLKGAQGFARQAGAIRSFDLGLAASATESKV 127
           WW ++   QLN LI++A + S  +  A AR+  AQ  A  AGA    ++ L  + +  K+
Sbjct: 50  WWTQFGSPQLNRLIDQARRDSFDVAAATARVHQAQASAVIAGAPLLPEVKLNLTTSRQKL 109

Query: 128 -----SERYQSATPPDGWNDYGTLTLNFQYDFDFWGKNRAAVVAATSELAAAEAESVAAR 182
                     ++   D  +++G   L   Y+ DFWG   AA  +A   + A+E +     
Sbjct: 110 LRGPGGPDLDASQSDDTVDNFGA-NLTASYEVDFWGGRAAARDSALHNVRASEFDQATVE 168

Query: 183 LMISTSIANAYAELARLYANQETVHAALQVRNKTVELLEKRYANGLETLGSVSQAKAVAA 242
           L + +S+A+ YA+       Q+     L      ++L++ RY  G  T   ++Q K++ A
Sbjct: 169 LTLLSSVADRYAQTLAAQQRQQIAELNLANARNVLDLVQTRYDAGSATALELAQQKSLVA 228

Query: 243 SVEAELLGIQESIQLQKNALAALVGQGPDRAASI-EEPHITLT---SRYGLPSEAGVGLL 298
           S + +L  IQ+  +  +  LAAL+GQ P +A ++  EP   LT      GLPS+    LL
Sbjct: 229 SQQRQLPLIQQLAEESRITLAALLGQ-PVQALNLGTEPFQALTWPAIGAGLPSQ----LL 283

Query: 299 GHRADITAARWRAEAAAQQVGIAQAQFYPDVTLSAFIGYQAFGLDHLFDSGNDAGAIGPA 358
             R DI  A  +  AA   V +A+A   P +TL A +G  A+    +  S       G  
Sbjct: 284 SRRPDIAKAEAQLAAAQADVTVARAAMLPAITLGATLGSDAYKAVDVLRSPYYTLTAG-- 341

Query: 359 IYLPLFTGGRLEGQLTSAEARYQEAVAQYNGTLVQALYEVADVVTSSQALQARINKTEQA 418
           +  P+F  GRL  +   A AR  E +  Y G ++    +V   ++S   L  +     + 
Sbjct: 342 LVAPIFNNGRLSAERDKARARQDELLQTYRGAIINGFADVEKSLSSITRLDQQREWQSEE 401

Query: 419 VQQAEQALHIATNRYQGGLATYLDVLVAEESLLNNQRALVNLQSRAFSLDLALIHALGGG 478
           +QQA+ A  IA +RYQ G    L VL  + +L   Q   V L+       +AL  ALGGG
Sbjct: 402 LQQAQTAFQIAESRYQAGAEDLLTVLETQRTLYTAQDQNVQLRLSRLQASIALYKALGGG 461

Query: 479 FET 481
           ++T
Sbjct: 462 WQT 464