Pairwise Alignments

Query, 484 a.a., multidrug resistance protein from Vibrio cholerae E7946 ATCC 55056

Subject, 483 a.a., multidrug RND transporter from Pseudomonas simiae WCS417

 Score =  277 bits (708), Expect = 7e-79
 Identities = 155/460 (33%), Positives = 253/460 (55%), Gaps = 2/460 (0%)

Query: 22  LLSAFVLTGCSVPDHYPDLATMWEANELSSTNTFSHQ--AEMDWPSANWWQRYQDAQLNH 79
           +L A  + GC+            +A+ L +  + S    +   WP+A+WW+   D QL+ 
Sbjct: 9   VLVAMSMAGCANYSGLDTQGKRLDASTLQAGKSLSGMTLSSAAWPTADWWKSLGDPQLDG 68

Query: 80  LIEEALQHSPSLEMAMARLKGAQGFARQAGAIRSFDLGLAASATESKVSERYQSATPPDG 139
           LI+EALQ+SP +++A AR   A+  A  A A R   L  +A  + S++++        D 
Sbjct: 69  LIQEALQNSPDMQVASARAHQAEAAAYAANAERMPTLDASAGVSRSRLAKDQDPRGQGDA 128

Query: 140 WNDYGTLTLNFQYDFDFWGKNRAAVVAATSELAAAEAESVAARLMISTSIANAYAELARL 199
           ++    +  +F Y+FD WG  RAA  AA  E  AA+ +  AARL ++ ++A AY++L + 
Sbjct: 129 YSTVRNIGASFNYNFDLWGGQRAAWEAALGEARAAQVDQQAARLTLAANVAKAYSDLGQA 188

Query: 200 YANQETVHAALQVRNKTVELLEKRYANGLETLGSVSQAKAVAASVEAELLGIQESIQLQK 259
           +  ++  +  L+   + ++L ++R  +G+++     Q +++ AS +++L+  ++ +Q  K
Sbjct: 189 HIVRDLANDDLKRTRQMLDLSKRRLDSGIDSHYQYQQTESLEASSQSQLIDAEKQLQSAK 248

Query: 260 NALAALVGQGPDRAASIEEPHITLTSRYGLPSEAGVGLLGHRADITAARWRAEAAAQQVG 319
            ALA L+G+GPDR   +  PH+   S   +PS     LLG R D+ AARWR EAA + + 
Sbjct: 249 IALAVLLGKGPDRGNELARPHVLKPSAVAVPSVLPAELLGRRPDLIAARWRVEAAGKSID 308

Query: 320 IAQAQFYPDVTLSAFIGYQAFGLDHLFDSGNDAGAIGPAIYLPLFTGGRLEGQLTSAEAR 379
            ++ +FYP++ LSA  G ++   D +F S +    I P I LP+F GGRL   L + +A 
Sbjct: 309 ASKTRFYPNLNLSASAGAESLLGDAMFGSASRFFNIAPTISLPIFDGGRLRADLDARDAD 368

Query: 380 YQEAVAQYNGTLVQALYEVADVVTSSQALQARINKTEQAVQQAEQALHIATNRYQGGLAT 439
           Y  AVAQYN TLVQAL ++ + ++  +    +I   + A   A+Q+      RY  G+  
Sbjct: 369 YDLAVAQYNKTLVQALGDIGNTLSQLRDTGRQIQAQQHAADIAQQSYDTGVQRYSAGIGN 428

Query: 440 YLDVLVAEESLLNNQRALVNLQSRAFSLDLALIHALGGGF 479
           YLDVL  E+ LL  QR L  L +    L + L+ ALGGG+
Sbjct: 429 YLDVLSIEQQLLQAQRQLATLNAAQIDLSIQLMQALGGGY 468