Pairwise Alignments

Query, 484 a.a., multidrug resistance protein from Vibrio cholerae E7946 ATCC 55056

Subject, 515 a.a., RND transporter from Pseudomonas simiae WCS417

 Score =  175 bits (444), Expect = 3e-48
 Identities = 116/419 (27%), Positives = 206/419 (49%), Gaps = 11/419 (2%)

Query: 68  WWQRYQDAQLNHLIEEALQHSPSLEMAMARLKGAQGFARQA-GAIR-SFDLGLAAS-ATE 124
           WW+ Y D QLN L+      + ++  A AR + AQ  AR + GA   + DL +  + A++
Sbjct: 93  WWELYGDRQLNDLVMRLNTANQTVAQAEARFRQAQALARSSRGAFYPTVDLSVGKTRASQ 152

Query: 125 SKVSERYQSATPPDGWNDYGTLTLNFQYDFDFWGKNRAAVVAATSELAAAEAESVAARLM 184
              S     ++   G  D     L   ++ D WGK R  + A  +   A+ A+  A RL 
Sbjct: 153 GTGSSNASLSSSSSGIRDTLNAQLGVSWEADIWGKLRRGLEANEASAEASSADLAAMRLS 212

Query: 185 ISTSIANAYAELARLYANQETVHAALQVRNKTVELLEKRYANGLETLGSVSQAKAVAASV 244
             + +  +Y +L  +      + A L+   +++++ E +Y  G+    +V+QA+    + 
Sbjct: 213 QQSELVQSYLQLRVMDEQTRLLQATLETYQRSLQMTENQYRAGVSGKDAVAQAQTQLKTT 272

Query: 245 EAELLGIQESIQLQKNALAALVGQGP---DRAASIEEPHITLTSRYGLPSEAGVGLLGHR 301
           +A L+ +       +NA+A L+G+ P   + A S + P +       LPS+    LL  R
Sbjct: 273 QASLIDLIWQRAQLENAIAVLIGEAPANFNLAVSKDIPALPQIP-VSLPSQ----LLERR 327

Query: 302 ADITAARWRAEAAAQQVGIAQAQFYPDVTLSAFIGYQAFGLDHLFDSGNDAGAIGPAIYL 361
            DI +A     AA   +G+A+A +YPD++LS   GY +          N   ++GP + +
Sbjct: 328 PDIASAERSVIAANANIGVAKAAYYPDLSLSLAGGYSSSTYADWISLPNRFWSVGPKLAM 387

Query: 362 PLFTGGRLEGQLTSAEARYQEAVAQYNGTLVQALYEVADVVTSSQALQARINKTEQAVQQ 421
            LF GG+   ++    A Y E VA+Y  T++    EV + +   + L+     + +A++ 
Sbjct: 388 TLFDGGQRSAEVDRTVASYDETVAKYRQTVLDGFREVENYMVQLKVLEDEAVVSNEALEA 447

Query: 422 AEQALHIATNRYQGGLATYLDVLVAEESLLNNQRALVNLQSRAFSLDLALIHALGGGFE 480
           A ++L +  N+Y+ GL  YLDV+  + + L+N+R ++ L        + LI ALGGG++
Sbjct: 448 ARESLRLTQNQYKAGLIAYLDVVTVQATALSNERTVLTLLQTRLVASVQLIAALGGGWD 506