Pairwise Alignments

Query, 484 a.a., multidrug resistance protein from Vibrio cholerae E7946 ATCC 55056

Subject, 481 a.a., RND transporter from Pseudomonas simiae WCS417

 Score =  187 bits (474), Expect = 9e-52
 Identities = 146/481 (30%), Positives = 229/481 (47%), Gaps = 22/481 (4%)

Query: 13  KAAPYFTASLLSAFVLTGCSV-PDHY-PDLATMWEANELSSTNTFSHQAEMDWPSANWWQ 70
           K   + T SL+S   L+ C+V PD   P    + + +E       S +A  D     WW 
Sbjct: 2   KRVAWLTLSLIS---LSACTVGPDFQRPQGPQVTQWSEPQGRQAAS-RAVNDPLQERWWD 57

Query: 71  RYQDAQLNHLIEEALQHSPSLEMAMARLKGAQGFARQAGAIRSFDLGLAASATESKVSER 130
            + D QL+ L   AL  +  L++A +RL+ ++   +   A R  ++   A+    +    
Sbjct: 58  VFHDEQLSALTRRALTDNLDLKLASSRLQQSRAVRQVTTAERYPNVN--ANGDYQRKRNS 115

Query: 131 YQSATPPDGWNDYGTLT-----LNFQYDFDFWGKNRAAVVAATSELAAAEAESVAARLMI 185
            +  + P G N            +  ++ DFWG+ +    AA + L  AE +  A  L +
Sbjct: 116 GKGLSDPSGNNGRSAFNQWDMGFSASWELDFWGRVKRETEAADATLQVAENDRRAVLLSV 175

Query: 186 STSIANAYAELARLYANQETVHAALQVRNKTVELLEKRYANGLETLGSVSQAKAVAASVE 245
               A  Y +L  +   +      L V   +++L + R A+G+ T   V++A A  A++E
Sbjct: 176 LAETAQNYIQLRGVQNTRAVTEQNLDVARHSLKLSQLRLADGVATDLDVAEAAAQVAAIE 235

Query: 246 AELLGIQESIQLQKNALAALVGQGPD--RAASIEEPHITLTSRY---GLPSEAGVGLLGH 300
           A L  +Q+      NAL+ L+G+ P    A   ++  +  T R    GLPSE    L   
Sbjct: 236 ARLPDLQQRQDQLINALSLLMGEPPQALHAQLSKDAAVPQTQRQVAIGLPSE----LAER 291

Query: 301 RADITAARWRAEAAAQQVGIAQAQFYPDVTLSAFIGYQAFGLDHLFDSGNDAGAIGPAIY 360
           R DI  A  R  AA   +G+A+  FYP +TLS  +G QA  L      G+ A A GP   
Sbjct: 292 RPDIRQAEARLHAATASIGVAKGDFYPRITLSGSLGSQAMQLSDFGSWGSRAFAFGPQFS 351

Query: 361 LPLFTGGRLEGQLTSAEARYQEAVAQYNGTLVQALYEVADVVTSSQALQARINKTEQAVQ 420
           LPLF GGRL+G L   EA+ QEA   Y  T+++A +E+ D +T   A Q R +   +AV+
Sbjct: 352 LPLFNGGRLQGMLNLREAQQQEAALAYQQTVLRAWHEIDDQLTRYNASQLRRDSLAEAVR 411

Query: 421 QAEQALHIATNRYQGGLATYLDVLVAEESLLNNQRALVNLQSRAFSLDLALIHALGGGFE 480
           Q + AL  A  +Y  G+  +++VL  + +LL  Q   V+  +      + L  ALGGG+E
Sbjct: 412 QNQIALRTAQQQYVEGVVDFVNVLTVQSALLATQEQWVDSSTGVSLAMVGLYKALGGGWE 471

Query: 481 T 481
           +
Sbjct: 472 S 472