Pairwise Alignments

Query, 484 a.a., multidrug resistance protein from Vibrio cholerae E7946 ATCC 55056

Subject, 490 a.a., Outer membrane factor (OMF) lipoprotein associated wth EmrAB-OMF efflux system from Variovorax sp. SCN45

 Score =  265 bits (676), Expect = 3e-75
 Identities = 166/469 (35%), Positives = 250/469 (53%), Gaps = 4/469 (0%)

Query: 13  KAAPYFTASLLSAFVLTGCSVPDHYPDLATMWEANELSSTNTFSHQAEMDWPSANWWQRY 72
           +  P   A+LL    L GC+        A + +A+ L      S  A +    + WW  +
Sbjct: 11  RRTPVVAAALL-VVALAGCADMAGIGSQAKLRDASSLGIAPD-SAAAPVSRLDSQWWLAF 68

Query: 73  QDAQLNHLIEEALQHSPSLEMAMARLKGAQGFARQAGAIRSFDLGLAASATESKVSERYQ 132
            D QLN LI++A+  +P+L++A ARL  AQ  A  AGA     +         K +  Y 
Sbjct: 69  GDPQLNSLIDQAVAGNPNLQVAQARLVRAQASADVAGAALKPKVNGELDLNRQKFNSNYI 128

Query: 133 SATPPDGW-NDYGTLTLNFQYDFDFWGKNRAAVVAATSELAAAEAESVAARLMISTSIAN 191
              P  G   + G L L   ++ DF+GKNR+A+  A     AA A++ AAR+++++++A 
Sbjct: 129 YPAPLGGSIQNIGLLQLGASWELDFFGKNRSALDTAIGAANAAAADADAARVLLASNVAR 188

Query: 192 AYAELARLYANQETVHAALQVRNKTVELLEKRYANGLETLGSVSQAKAVAASVEAELLGI 251
           +Y + ARL          L  R++T++L+  R + GL+T   + Q++        ++  +
Sbjct: 189 SYFQWARLNDQLTVAKRTLAQRDETLKLVRDRVSAGLDTRLELRQSEGGLPEARQQIESL 248

Query: 252 QESIQLQKNALAALVGQGPDRAASIEEPHITLTSRYGLPSEAGVGLLGHRADITAARWRA 311
            E I LQ++AL ALV Q P+ + S++ P +       L +     LLG RADI AARWR 
Sbjct: 249 NEQIALQQHALDALVAQ-PNVSQSLKPPLLGEVKPIALQTNIPADLLGRRADIAAARWRV 307

Query: 312 EAAAQQVGIAQAQFYPDVTLSAFIGYQAFGLDHLFDSGNDAGAIGPAIYLPLFTGGRLEG 371
           EAA   V  A+  FYP+V L+AF G+QA G   L  SG++   +GPAI LP+F GG+L  
Sbjct: 308 EAATSDVANAKTLFYPNVNLTAFAGFQALGFGKLLKSGSEQWGVGPAISLPIFEGGKLRA 367

Query: 372 QLTSAEARYQEAVAQYNGTLVQALYEVADVVTSSQALQARINKTEQAVQQAEQALHIATN 431
            L    A    A+  YN T++ A+ + AD VTS+Q++  +  +   A   AE A  IA  
Sbjct: 368 NLRGKSADLDVAIESYNATVIDAVRDAADQVTSAQSIARQQTEQRAAQTAAEGAYDIAVQ 427

Query: 432 RYQGGLATYLDVLVAEESLLNNQRALVNLQSRAFSLDLALIHALGGGFE 480
           RY+ GL  YL+VL AE S+L  +R  V+L +RA    +AL  ALGGG++
Sbjct: 428 RYRAGLGNYLNVLTAETSVLAQRRLAVDLAARALDTQVALARALGGGWQ 476