Pairwise Alignments

Query, 484 a.a., multidrug resistance protein from Vibrio cholerae E7946 ATCC 55056

Subject, 498 a.a., Efflux transport system, outer membrane factor (OMF) lipoprotein from Variovorax sp. SCN45

 Score =  192 bits (488), Expect = 2e-53
 Identities = 137/475 (28%), Positives = 226/475 (47%), Gaps = 15/475 (3%)

Query: 16  PYFTA--SLLSAFVLTGCS-VPDHYPDLATMWEANELSSTNTFSHQAEM-------DWPS 65
           P+ TA   L++A VL GC+ VP   P++ T  +  E       +  A           P 
Sbjct: 11  PFRTALLPLMAALVLAGCATVPSGLPEIQTTAQFKEQGKDQGATPPAGFTRAVPSESQPR 70

Query: 66  ANWWQRYQDAQLNHLIEEALQHSPSLEMAMARLKGAQGFARQAGAIRSFDLGLAASATES 125
             WW  + D  LN L+E+A  H+  ++ A ARL  A+  AR A A R   +GL A A   
Sbjct: 71  GAWWLAFNDPTLNALVEKADIHNNDIQAAAARLAEARALARTADADRLPQIGLGAGANRG 130

Query: 126 KVSERYQSATPPDGWNDYGTLTLNFQYDFDFWGKNRAAVVAATSELAAAEAESVAARLMI 185
              ++  ++T P    + G     F Y+ D +G+   A  AA  + A  EA   + RL +
Sbjct: 131 AGLDKATASTRPATMTNIGA---TFSYEVDLFGRLSGASKAARLDAAGREALLQSTRLAV 187

Query: 186 STSIANAYAELARLYANQETVHAALQVRNKTVELLEKRYANGLETLGSVSQAKAVAASVE 245
               A  Y +L  L A +  V   ++    T+ L ++R   G      V++ +   +S E
Sbjct: 188 QAQTAQTYLQLRALDAERALVREQVEAYRDTLRLSQRREQAGDIAELDVARVQTEVSSTE 247

Query: 246 AELLGIQESIQLQKNALAALVGQGPDRAASIEEPHITLTSRYGLPSEAGVGLLGHRADIT 305
           ++ L +       ++ALA LVG          +   T+     +P+     +L  R D++
Sbjct: 248 SDALALDRQRAQVEHALAVLVGDSASSFGLRTDEWSTVLPN--IPAGVPSTVLMRRPDVS 305

Query: 306 AARWRAEAAAQQVGIAQAQFYPDVTLSAFIGYQAFGLDHLFDSGNDAGAIGPAIYLPLFT 365
           AA+    AA  +VG+AQA ++PD++L+   GY +  +  LF     +  +G  + LP+F 
Sbjct: 306 AAQSAVLAAQARVGVAQAAWFPDISLTGAAGYASPEIGDLFKWSARSWGVGALLSLPIFD 365

Query: 366 GGRLEGQLTSAEARYQEAVAQYNGTLVQALYEVADVVTSSQALQARINKTEQAVQQAEQA 425
           GGR E  +  A A+   A+A Y    + A  EV D + + + LQ +     QAV  A++A
Sbjct: 366 GGRREAGVQGANAQLDGALASYRTQALVAFQEVEDQLAAIRILQEQSVVQAQAVTSAQRA 425

Query: 426 LHIATNRYQGGLATYLDVLVAEESLLNNQRALVNLQSRAFSLDLALIHALGGGFE 480
             ++  RY+ G  + LD+L A  S L N+R  + ++S  +   +AL+ A+GGG++
Sbjct: 426 TSLSDTRYRNGYISQLDLLDARRSELRNRRQALQVKSAQYQAAVALVRAIGGGWD 480