Pairwise Alignments

Query, 484 a.a., multidrug resistance protein from Vibrio cholerae E7946 ATCC 55056

Subject, 494 a.a., Efflux transport system, outer membrane factor (OMF) lipoprotein from Variovorax sp. SCN45

 Score =  187 bits (475), Expect = 7e-52
 Identities = 135/472 (28%), Positives = 234/472 (49%), Gaps = 28/472 (5%)

Query: 21  SLLSAFVLTGCSVPDHY--PD--LATMWEANELSSTNTFSHQAEMDWPSANWWQRYQDAQ 76
           +LL+A ++ GC+V   Y  PD  L   W+  E    +  +  A+       WW+R+ D Q
Sbjct: 11  ALLAAMLVAGCAVGPDYKTPDTPLPVSWKLEEPWRVSAPNDAAD----KGPWWRRFGDPQ 66

Query: 77  LNHLIEEALQHSPSLEMAMARLKGAQGFARQAGAIRSFDLGLAASATESKVSER-----Y 131
           L+ L ++AL  SP+L +A ARL  A+       A +   +GL   A+  ++S       Y
Sbjct: 67  LDALQQQALAGSPTLAIANARLAQARATLAANAAGQYPQVGLGTRASRLRISANRPLTNY 126

Query: 132 QSATPPDGWNDYGTLTLNFQYDFDFWGKNRAAVVAATSELAAAEAESVAARLMISTSIAN 191
            +       ND+  L+LN  Y+ D  G+ +  V  A +    + A+    RL++S  +A+
Sbjct: 127 ATPNSTTVQNDFA-LSLNASYEVDLAGRVQRTVEGAKASAEQSAADLQNTRLLLSADVAS 185

Query: 192 AYAELARLYANQETVHAALQVRNKTVELLEKRYANGLETLGSVSQAKAVAASVEAELLGI 251
           +Y  L       + V  ++ ++ + +EL+  R+  G  +   V+Q +++  +   ++  +
Sbjct: 186 SYFNLRSTDIELDVVTRSIALQRRALELVTARHDLGAVSGLDVAQQQSLLETTLTQVDVL 245

Query: 252 QESIQLQKNALAALVGQG------PDRAASIEEPHITLTSRYGLPSEAGVGLLGHRADIT 305
           ++     ++ALA L G        P     I  P + L    G+PSE    +L  R D+ 
Sbjct: 246 RKQRSQYEHALATLTGTPAPSFSLPVDLREIRPPAVPL----GVPSE----ILQRRPDVA 297

Query: 306 AARWRAEAAAQQVGIAQAQFYPDVTLSAFIGYQAFGLDHLFDSGNDAGAIGPAIYLPLFT 365
           +A     AA  Q+G+A A FYP + +S  +G  +  ++ LF+  +   ++G +    LF 
Sbjct: 298 SAERAMAAANAQIGVATAAFYPSIFISPTVGVDSRTIETLFNGPSLLWSVGVSATQVLFD 357

Query: 366 GGRLEGQLTSAEARYQEAVAQYNGTLVQALYEVADVVTSSQALQARINKTEQAVQQAEQA 425
           GGR+   +  A+A Y   V  Y  T++ A+ EV D +T   AL +   + + AV  A + 
Sbjct: 358 GGRIRANVDFAKAGYDVTVGNYRRTVLTAMQEVEDGITGLSALDSATAQAQAAVTAARRV 417

Query: 426 LHIATNRYQGGLATYLDVLVAEESLLNNQRALVNLQSRAFSLDLALIHALGG 477
           L +AT+RY+GG +TYLDV+ A++SLL  +R    L+ +     + L+ ALGG
Sbjct: 418 LDMATSRYEGGASTYLDVITAQQSLLTVERQAAQLRGQRLLTAVFLVKALGG 469