Pairwise Alignments

Query, 484 a.a., multidrug resistance protein from Vibrio cholerae E7946 ATCC 55056

Subject, 488 a.a., predicted outer membrane factor of efflux pump (NCBI) from Escherichia coli BW25113

 Score =  171 bits (434), Expect = 4e-47
 Identities = 124/433 (28%), Positives = 189/433 (43%), Gaps = 10/433 (2%)

Query: 57  HQAEMDWPSANWWQRYQDAQLNHLIEEALQHSPSLEMAMARLKGAQGFARQAGAIRSFDL 116
           H A   WP A WW++  D QL+ LI+  L  S +L  A  R + AQ  A    A     +
Sbjct: 49  HLASSGWPQAQWWKQLNDPQLDALIQRTLSGSHTLAEAKLREEKAQSQADLLDAGSQLQV 108

Query: 117 GLAASATESKVSER-----YQSATPPDGWND----YGTLTLNFQYDFDFWGKNRAAVVAA 167
                    +VS       Y    P  G +       T+ L    D D WG +R+AV AA
Sbjct: 109 AALGMLNRQRVSANGFLSPYSMDAPALGMDGPYYTEATVGLFAGLDLDLWGVHRSAVAAA 168

Query: 168 TSELAAAEAESVAARLMISTSIANAYAELARLYANQETVHAALQVRNKTVELLEKRYANG 227
                AA AE+ A  L ++T +A  Y  +   Y   + +     V +  V+  + + A+G
Sbjct: 169 IGAHNAALAETAAVELSLATGVAQLYYSMQASYQMLDLLEQTHDVIDYAVKAHQSKVAHG 228

Query: 228 LETLGSVSQAKAVAASVEAELLGIQESIQLQKNALAALVGQGPDRAASIEEPHITLTSRY 287
           LE       A+A   +V+ +++ ++  I   + +L AL+G G      I  P      + 
Sbjct: 229 LEAQVPFHGARAQILAVDKQIVAVKGQITETRESLRALIGAGASDMPEIR-PVALPQVQT 287

Query: 288 GLPSEAGVGLLGHRADITAARWRAEAAAQQVGIAQAQFYPDVTLSAFIGYQAFGLDHLFD 347
           G+P+     LL  R D+ A RW  +A+  QV  A+A FYP   + AF G  +  L  LF 
Sbjct: 288 GIPATLSYELLARRPDLQAMRWYVQASLDQVDSARALFYPSFDIKAFFGLDSIHLHTLFK 347

Query: 348 SGNDAGAIGPAIYLPLFTGGRLEGQLTSAEARYQEAVAQYNGTLVQALYEVADVVTSSQA 407
             +      P + LPLF GGRL   L    A     + +YN +++ A+ +VA   T  Q 
Sbjct: 348 KTSRQFNFIPGLKLPLFDGGRLNANLEGTRAASNMMIERYNQSVLNAVRDVAVNGTRLQT 407

Query: 408 LQARINKTEQAVQQAEQALHIATNRYQGGLATYLDVLVAEESLLNNQRALVNLQSRAFSL 467
           L        + V+        A   YQ GL + L    A   +L  + +L+ L SR    
Sbjct: 408 LNDEREMQAERVEATRFTQRAAEAAYQRGLTSRLQATEARLPVLAEEMSLLMLDSRRVIQ 467

Query: 468 DLALIHALGGGFE 480
            + L+ +LGGG++
Sbjct: 468 SIQLMKSLGGGYQ 480