Pairwise Alignments

Query, 397 a.a., ATP-dependent helicase from Vibrio cholerae E7946 ATCC 55056

Subject, 532 a.a., ATP-dependent RNA helicase RhlE from Xanthobacter sp. DMC5

 Score =  276 bits (707), Expect = 8e-79
 Identities = 159/369 (43%), Positives = 223/369 (60%), Gaps = 4/369 (1%)

Query: 1   MSFSQLGLSDVLVQTVAQLGYQKPTHIQTQAIPVILQGRDLIAAAQTGTGKTASFVLPIL 60
           MSFS+LGLSD ++  VA  GY  PT IQ QAIP +L  RD++  AQTGTGKTA+F LP+L
Sbjct: 1   MSFSELGLSDKVLAAVADTGYTTPTPIQAQAIPHVLARRDVLGLAQTGTGKTAAFTLPML 60

Query: 61  EKLRQGQTQRKKRVRALILVPTRELAMQVAEKVEQYGKDTGLKSLAVFGGVDEQAQKQRL 120
             L QG+  R +  R LIL PTRELA QV E   +YGK + L    + GGV    Q  +L
Sbjct: 61  TLLEQGRA-RARMPRTLILEPTRELAAQVEENFTRYGKYSKLNVALLIGGVSFGDQDTKL 119

Query: 121 IDGVDVLVATPGRLMDLYGQRAVYFEEIEMVVLDEADRMLDMGFIESINKIIDCLPSEVQ 180
           + GVDVL+ATPGRL+D   +  +    IE++V+DEADRMLDMGFI  I +I   +P   Q
Sbjct: 120 VRGVDVLIATPGRLLDHVERGRLLLSGIEVLVIDEADRMLDMGFIPDIERICKLVPFTRQ 179

Query: 181 FLLFSATLSRKVRELAKTAVRDPHEISIAANQASKSNISQWLITVDKD--TKSALLSHLI 238
            L FSAT+  +++ L    +  P  + ++   ++ + ++Q L+   ++   K  +L  LI
Sbjct: 180 TLFFSATMPPEIQRLVSQFLSSPVRVEVSKPASTATTVTQELVASGREDYEKREVLRELI 239

Query: 239 NE-QQWDQALIFIETKHGAAKLVSQLEKRGIHAEAFHSGRSQAIRAQLLEDFKSGKIKYL 297
              +     +IF   K   A L   L+K G +A A H    Q  R + L++F++G+   L
Sbjct: 240 RSCENLQNGIIFCNRKRDVAVLHRSLQKHGFNAVALHGDMDQHARIKALDEFRNGEATLL 299

Query: 298 VATGVAARGIDIDQLSRVVNYDLPFPADEYVHRIGRTGRAEAVGEAISFVSKDNFKNLCM 357
           VA+ VAARG+DI  +S V NYD+P  +++YVHRIGRTGRA   G A + V+  + K+L  
Sbjct: 300 VASDVAARGLDIPAVSHVFNYDVPHHSEDYVHRIGRTGRAGRAGTAYTMVTHLDAKSLSA 359

Query: 358 IESRLGHLI 366
           IE  +G+ I
Sbjct: 360 IEKLIGNPI 368